PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016651150.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

Dof

Protein Properties

Length: 332aa MW: 35233.3 Da PI: 7.358

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016651150.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.5	1.4e-38	35	93	3	61
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++alkcprCds ntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+r+ k+s XP_016651150.1 35 QQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRQTKSS 93 7899***************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	5.9E-33	36	92	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	4.0E-27	36	90	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.134	38	92	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	40	76	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MQDIHSVGGA RFFAGSGGGG GGGDRRLRPH HHLNQQALKC PRCDSLNTKF CYYNNYNLSQ 60 PRHFCKSCRR YWTKGGVLRN VPVGGGCRQT KSSKPQISSN SSPSSSPPPS PPQPNSATDQ 120 HKASSHSSSE SSSLTNTTTA AAAAATATEA VSAPSSTGSA SNLLRNIHRQ ESKFFGSQSG 180 GFEPGAAAAL LEQSTEMNGM FSEIGSFTSL ITSSNDLPFG FGNIGGTDAS VSPFRVNQQA 240 QGHHQNQWGQ QNQSEELKMQ ELSGGLMDQT GQVDLSVFHG RSNGGGGGVF GSLDWQAGSG 300 DQGLFDLPNT VDQAYWSQSQ WTDQDHPTLY LP

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00570	DAP	Transfer from AT5G60850	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_016651150.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ857254	4e-58	DQ857254.1 Glycine max Dof4 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016651150.1	0.0	PREDICTED: dof zinc finger protein DOF5.4
TrEMBL	M5WA03	0.0	M5WA03_PRUPE; Uncharacterized protein
STRING	EMJ10549	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5998	30	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	2e-51	OBF binding protein 4