PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016650972.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | HSF | ||||||||
Protein Properties | Length: 340aa MW: 38525.1 Da PI: 7.9337 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 111.9 | 4.4e-35 | 44 | 135 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k++++++d+++++++sws+ g sfvv+d++ f ++Lp+yFkhsnf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k+ll++ XP_016650972.1 44 FLTKTFDMVDDPSTNRIVSWSRGGGSFVVWDPHPFVMNLLPRYFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFVRGQKHLLKN 129 9****************************************************************999.........****************** PP XXXXXX CS HSF_DNA-bind 97 ikrkks 102 ikrkk+ XP_016650972.1 130 IKRKKT 135 ****96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 6.53E-36 | 40 | 133 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 4.2E-38 | 40 | 133 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 6.1E-62 | 40 | 133 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.7E-20 | 44 | 67 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 8.4E-32 | 44 | 133 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.7E-20 | 82 | 94 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 83 | 107 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.7E-20 | 95 | 107 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MNYLYPVKEE FPGSSSSQSG PGDPVVMIPP QPMEGLNDIG PPPFLTKTFD MVDDPSTNRI 60 VSWSRGGGSF VVWDPHPFVM NLLPRYFKHS NFSSFVRQLN TYGFRKVDPD RWEFANEGFV 120 RGQKHLLKNI KRKKTPSQPL PAQQALGPCV EVGRFGLDGE IDRLRRDKQV LMMELVKLRQ 180 QQQNTRAYLQ AMEQRIQGTE MKQQQMMAFL ARAMQNPAFM QQLVQQKDKR KELEEAMTKK 240 RRRPIDQGPS GVGGGKSSLK GKGTNLIKCE PLEFGDCDYE MSELEALALE MQGFGKARKE 300 QDEESERFEG DLSIPSAIVG EDEDVIILAD RLGYLGSCPK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 3e-25 | 42 | 135 | 18 | 122 | Heat shock factor protein 1 |
5d5u_B | 4e-25 | 42 | 135 | 27 | 131 | Heat shock factor protein 1 |
5d5v_B | 4e-25 | 42 | 135 | 27 | 131 | Heat shock factor protein 1 |
5d5v_D | 4e-25 | 42 | 135 | 27 | 131 | Heat shock factor protein 1 |
5hdg_A | 3e-25 | 42 | 135 | 8 | 112 | Heat shock factor protein 1 |
5hdn_A | 3e-25 | 42 | 135 | 8 | 112 | Heat shock factor protein 1 |
5hdn_B | 3e-25 | 42 | 135 | 8 | 112 | Heat shock factor protein 1 |
5hdn_C | 3e-25 | 42 | 135 | 8 | 112 | Heat shock factor protein 1 |
5hdn_D | 3e-25 | 42 | 135 | 8 | 112 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 228 | 242 | KRKELEEAMTKKRRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00371 | DAP | Transfer from AT3G22830 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_016650972.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008235357.1 | 0.0 | PREDICTED: heat stress transcription factor A-7a | ||||
Refseq | XP_016650969.1 | 0.0 | PREDICTED: heat stress transcription factor A-7a | ||||
Refseq | XP_016650970.1 | 0.0 | PREDICTED: heat stress transcription factor A-7a | ||||
Refseq | XP_016650971.1 | 0.0 | PREDICTED: heat stress transcription factor A-7a | ||||
Refseq | XP_016650972.1 | 0.0 | PREDICTED: heat stress transcription factor A-7a | ||||
Refseq | XP_016650973.1 | 0.0 | PREDICTED: heat stress transcription factor A-7a | ||||
Refseq | XP_016650974.1 | 0.0 | PREDICTED: heat stress transcription factor A-7a | ||||
Swissprot | Q9LUH8 | 1e-122 | HFA6B_ARATH; Heat stress transcription factor A-6b | ||||
TrEMBL | A0A251N5G9 | 0.0 | A0A251N5G9_PRUPE; Uncharacterized protein | ||||
STRING | XP_008235357.1 | 0.0 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22830.1 | 1e-113 | heat shock transcription factor A6B |