PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016650852.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

HB-other

Protein Properties

Length: 987aa MW: 109643 Da PI: 9.2784

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016650852.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	19.2	2.1e-06	70	126	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ ++++F + +s++e +eL++ g+t +qV+ +F +R + +k XP_016650852.1 70 KRPRDLLNPKAIKYMQSVFSIKDAISKKESRELSALFGVTGTQVRDFFNSQRSRVRK 126 799**************************************************9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.847	67	127	IPR001356	Homeobox domain
SMART	SM00389	8.6E-4	69	131	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.9E-5	69	137	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.88E-6	69	130	IPR009057	Homeodomain-like
CDD	cd00086	9.22E-4	70	126	No hit	No description
Gene3D	G3DSA:1.20.930.10	1.4E-5	227	318	IPR017923	Transcription factor IIS, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 987 aa Download sequence Send to blast
MEDLSEMEIG SSVESVQKFL DSQRQLFHSQ IDQLQKVVVT QCNLTGVNPL SQEMAAGALS 60 VKIDGPFAGK RPRDLLNPKA IKYMQSVFSI KDAISKKESR ELSALFGVTG TQVRDFFNSQ 120 RSRVRKLVQL SREKATRSSE HKELQDGVST SSDPLTPIDP VPLNSVGPSS VEDAPSCSTQ 180 DDALSGLDDL DKHFVDNIFN LMRKEETFSG QVKLMEWILQ IQNSSVLCWF LNTGGVMILA 240 TWLSQAAIEE QTSVLLVILK VLCHLPLHKA LPVHMSAILQ SVNRLRFYRT ADVSNRARVL 300 LSRWSKLLAR IQNMKKPNGM KTSSDSQHEL VMLKQSIDEV MGDESWKSNI DIPEDIFATP 360 FENAENSRRS EASEPLKLLT ASSDESNKKQ ILGVSSSQFR ARRKVQLVEQ PGQKSAGRSV 420 QVTRATPVSK GRPMSADDIQ KAKMRAQFMQ SKYGKSGSSN ENKELKTEGG NKLSTSQASI 480 LPVVPKVPVR LDIEEPKKPV TLLLKERETP NRLETSLAPK LRMDLKESIL EKCQRIRVPW 540 KTPPEIKLDP EWRVGGGENG KEIEVQRNRN RREKETIYQR VQEIPSNPKE PWDIEMDYDD 600 SLTPDIPIEQ PPDADGTETQ ASLSREGNNA QAWVASSQGV NSAASLAPAL SQMNGASAAA 660 EPDLELLAVL LKNPELVFAL TSGQAANLSS EDTVKLLDMI KSGGAGNLNG LGRKMEQRVE 720 VSLPSPTPSS NPGTNSQSGW RADAGWNAFP QQMATTNKSL VSSAVRMIPS QRLSTSQPAV 780 PSYSPDYFPP SMQTPAASEM VLTMKNTHLN NLSNSYNVAE RQPNSFPPPL VTTPARQQRQ 840 PQPLQQSRFS EPRLPTHMYP SKPQMGKPGP PPPSPSDSWR ARQDVPSNYR YLENQNQYNA 900 SYGGPSQQPQ LLPGPSWEGN ERVGGNQDFE SWSPDNSPTR NPGYMYGREP RMNTARDYMP 960 DRSRQMNPSG YGGQNRLGNR WPDRGRQ

Sequence ? help Back to Top

Protein Sequence Length: 987 aa Download sequence Send to blast

MEDLSEMEIG SSVESVQKFL DSQRQLFHSQ IDQLQKVVVT QCNLTGVNPL SQEMAAGALS  60
VKIDGPFAGK RPRDLLNPKA IKYMQSVFSI KDAISKKESR ELSALFGVTG TQVRDFFNSQ  120
RSRVRKLVQL SREKATRSSE HKELQDGVST SSDPLTPIDP VPLNSVGPSS VEDAPSCSTQ  180
DDALSGLDDL DKHFVDNIFN LMRKEETFSG QVKLMEWILQ IQNSSVLCWF LNTGGVMILA  240
TWLSQAAIEE QTSVLLVILK VLCHLPLHKA LPVHMSAILQ SVNRLRFYRT ADVSNRARVL  300
LSRWSKLLAR IQNMKKPNGM KTSSDSQHEL VMLKQSIDEV MGDESWKSNI DIPEDIFATP  360
FENAENSRRS EASEPLKLLT ASSDESNKKQ ILGVSSSQFR ARRKVQLVEQ PGQKSAGRSV  420
QVTRATPVSK GRPMSADDIQ KAKMRAQFMQ SKYGKSGSSN ENKELKTEGG NKLSTSQASI  480
LPVVPKVPVR LDIEEPKKPV TLLLKERETP NRLETSLAPK LRMDLKESIL EKCQRIRVPW  540
KTPPEIKLDP EWRVGGGENG KEIEVQRNRN RREKETIYQR VQEIPSNPKE PWDIEMDYDD  600
SLTPDIPIEQ PPDADGTETQ ASLSREGNNA QAWVASSQGV NSAASLAPAL SQMNGASAAA  660
EPDLELLAVL LKNPELVFAL TSGQAANLSS EDTVKLLDMI KSGGAGNLNG LGRKMEQRVE  720
VSLPSPTPSS NPGTNSQSGW RADAGWNAFP QQMATTNKSL VSSAVRMIPS QRLSTSQPAV  780
PSYSPDYFPP SMQTPAASEM VLTMKNTHLN NLSNSYNVAE RQPNSFPPPL VTTPARQQRQ  840
PQPLQQSRFS EPRLPTHMYP SKPQMGKPGP PPPSPSDSWR ARQDVPSNYR YLENQNQYNA  900
SYGGPSQQPQ LLPGPSWEGN ERVGGNQDFE SWSPDNSPTR NPGYMYGREP RMNTARDYMP  960
DRSRQMNPSG YGGQNRLGNR WPDRGRQ

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269\|PubMed:10363371}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_016650852.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016650852.1	0.0	PREDICTED: homeobox protein LUMINIDEPENDENS isoform X1
Swissprot	Q38796	0.0	LUMI_ARATH; Homeobox protein LUMINIDEPENDENS
TrEMBL	A0A251N3G3	0.0	A0A251N3G3_PRUPE; Uncharacterized protein
STRING	XP_008235014.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9809	29	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	0.0	HB-other family protein

Publications ? help Back to Top
Chakrabortee S, et al. Luminidependens (LD) is an Arabidopsis protein with prion behavior. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(21): p. 6065-70 [PMID:27114519]