PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016650771.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | B3 | ||||||||
Protein Properties | Length: 390aa MW: 44549.9 Da PI: 9.2863 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 54 | 3.1e-17 | 10 | 99 | 3 | 98 |
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +l+ s++l+ ++l++p +f++++ + s+ tl ++g++W+v + ++ ++++++ +GW+eF + +++g f++F+++grs+f +v++f+ XP_016650771.1 10 HKLILSSTLQAKQLMIPENFVKKFRDD--LSTVATLSVPDGNVWRVLI--KQADNKFWFHDGWQEFIERYSIRVGYFLTFRYEGRSSF--TVHIFN 99 5677789999999***********877..88899999***********..**************************************..888885 PP | |||||||
2 | B3 | 59.2 | 7.4e-19 | 276 | 365 | 4 | 97 |
E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 vl ps+ + ++++lp fae++ +g++ ++l++++gr+W v++ yr+++ l++GW eF +n+L egD++vF+l + +e l+v+vf XP_016650771.1 276 VLRPSYLYRGCIMYLPSCFAEKNlNGVSG---FIKLQSSDGRQWPVRCLYRGGR--AKLSQGWYEFTLENNLGEGDVCVFELLKMKEVVLKVTVF 365 78899******************877743...5***************665555..66***********************98877776777765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.3E-22 | 6 | 99 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.87E-23 | 6 | 99 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.90E-19 | 7 | 99 | No hit | No description |
PROSITE profile | PS50863 | 13.563 | 8 | 101 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.1E-16 | 9 | 101 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-14 | 10 | 99 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.8E-24 | 266 | 366 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.41E-24 | 267 | 366 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.44E-22 | 271 | 366 | No hit | No description |
PROSITE profile | PS50863 | 13.719 | 273 | 368 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.1E-18 | 273 | 368 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.3E-17 | 276 | 364 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0010048 | Biological Process | vernalization response | ||||
GO:0005654 | Cellular Component | nucleoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 390 aa Download sequence Send to blast |
MKNMIRPCFH KLILSSTLQA KQLMIPENFV KKFRDDLSTV ATLSVPDGNV WRVLIKQADN 60 KFWFHDGWQE FIERYSIRVG YFLTFRYEGR SSFTVHIFNL TTAEINYQPN ALSSTGGSVY 120 RHQVFEEMED DDSVEILGST PKSIVTDSLR DKLFGDCANQ PIPGKDYNPP ALQNLFNGSK 180 PKNCTNWPDA GNPHPSKGSG LQAGEDIRSM KKTMRKKRKL DPMQESSSQH EKEVEIRFRF 240 YESASARKRT VTAEERERAI NAAKTFEPVN PFCRVVLRPS YLYRGCIMYL PSCFAEKNLN 300 GVSGFIKLQS SDGRQWPVRC LYRGGRAKLS QGWYEFTLEN NLGEGDVCVF ELLKMKEVVL 360 KVTVFCVVEA AGFVNQPPQQ NASQAKMIRN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 2e-71 | 239 | 369 | 15 | 144 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 2e-71 | 239 | 369 | 15 | 144 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_016650771.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016650771.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor VRN1 isoform X3 | ||||
Swissprot | Q8L3W1 | 1e-136 | VRN1_ARATH; B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | M5VIZ9 | 0.0 | M5VIZ9_PRUPE; Uncharacterized protein | ||||
STRING | XP_008236688.1 | 0.0 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 1e-135 | B3 family protein |
Publications ? help Back to Top | |||
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