PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016650699.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

GRAS

Protein Properties

Length: 709aa MW: 80328.2 Da PI: 5.8835

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016650699.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	375.7	5.8e-115	336	707	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 +lL++cA+av+s d + a++lL+++++++sp+gd++qRla+yf+ +L+arla+ + y+ l + + s +e l+a+++++ sP+ ++s++ XP_016650699.1 336 STLLTQCAQAVASYDRRTASELLKQIRQHSSPYGDATQRLAHYFADGLEARLAGARTPSYSPLVSMQIS---AAEILKAHEVYVTSSPFKNMSNF 427 579*************************************************999999999999998...9****************** PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189 +aN++Il+ +e+++r+H+iDf+is+G+QWp++++ L++R +gpp+lRiT+++ p++g +e++eetg+rL+k+Ae+++vpfe+nv +a+++e++ XP_016650699.1 428 MANSTILKLAEKATRLHVIDFGISYGFQWPCFIHRLSERLGGPPMLRITAIELPQPGfrPTERVEETGRRLKKYAERFNVPFEYNV-IAQKWETI 521 ****************************************************9************************9.7*** PP GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284 ++e+L+++++E+++Vn++ +l++++de+v ++s+rd vLkl+k+++P+++++ + +ns+ F++rf eal ++salfd++ea++p+e+e r XP_016650699.1 522 QFEDLKIDRNEVIVVNCMNRLKHIPDETVMVNSPRDIVLKLIKKINPDLFIHGVVNGTYNSPFFVTRFREALFHFSALFDMFEASVPHEDERRLL 616 ******************************************************************************************* PP GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 E++ gr+i nvvaceg er+er et+++W+ r +aGFk++pl+++ k +k++l+ ++ + ++++e+ +++++gWk+r ++S+W+ XP_016650699.1 617 FEKAQYGRDILNVVACEGLERVERPETYKQWQVRNVRAGFKQLPLDQELLKRVKRMLKFMGyHNDFSIDEDGHWMLQGWKGRITRALSFWK 707 ******************************************************9999999***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	65.701	309	686	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.0E-112	336	707	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 709 aa Download sequence Send to blast
MDTLLERYSL SMERFNFGHG SASLYSNQNL VNGFHVNQES TSPVLLSTNL DHPSDSSTSL 60 SSGSDGDTID FSDYNHPVLK YVSDILLEED LEGKTCMLQD CLALQAAEKS FYDVLNQEDP 120 PSPNQLPLSV HQSFENSDDD SPHSCHRSNG SIAAKTDWVF DPSETSNAQS SLVQSLSDAG 180 LVSDSLSEMH SLGHSGGLVE ASKFLPNVKL EGNRLMPPGL DQWPSSTNIL MTTPDNDGYN 240 STNELKGKKN HQREDADYPE EGRSNKQPVA FADDSEPQEM FDEVLLCHGN REFESCSPDE 300 SLISEGSGKL QRNKQKGSKT ARSKKQNNNW ELVDLSTLLT QCAQAVASYD RRTASELLKQ 360 IRQHSSPYGD ATQRLAHYFA DGLEARLAGA RTPSYSPLVS MQISAAEILK AHEVYVTSSP 420 FKNMSNFMAN STILKLAEKA TRLHVIDFGI SYGFQWPCFI HRLSERLGGP PMLRITAIEL 480 PQPGFRPTER VEETGRRLKK YAERFNVPFE YNVIAQKWET IQFEDLKIDR NEVIVVNCMN 540 RLKHIPDETV MVNSPRDIVL KLIKKINPDL FIHGVVNGTY NSPFFVTRFR EALFHFSALF 600 DMFEASVPHE DERRLLFEKA QYGRDILNVV ACEGLERVER PETYKQWQVR NVRAGFKQLP 660 LDQELLKRVK RMLKFMGYHN DFSIDEDGHW MLQGWKGRIT RALSFWKKA

Sequence ? help Back to Top

Protein Sequence Length: 709 aa Download sequence Send to blast

MDTLLERYSL SMERFNFGHG SASLYSNQNL VNGFHVNQES TSPVLLSTNL DHPSDSSTSL  60
SSGSDGDTID FSDYNHPVLK YVSDILLEED LEGKTCMLQD CLALQAAEKS FYDVLNQEDP  120
PSPNQLPLSV HQSFENSDDD SPHSCHRSNG SIAAKTDWVF DPSETSNAQS SLVQSLSDAG  180
LVSDSLSEMH SLGHSGGLVE ASKFLPNVKL EGNRLMPPGL DQWPSSTNIL MTTPDNDGYN  240
STNELKGKKN HQREDADYPE EGRSNKQPVA FADDSEPQEM FDEVLLCHGN REFESCSPDE  300
SLISEGSGKL QRNKQKGSKT ARSKKQNNNW ELVDLSTLLT QCAQAVASYD RRTASELLKQ  360
IRQHSSPYGD ATQRLAHYFA DGLEARLAGA RTPSYSPLVS MQISAAEILK AHEVYVTSSP  420
FKNMSNFMAN STILKLAEKA TRLHVIDFGI SYGFQWPCFI HRLSERLGGP PMLRITAIEL  480
PQPGFRPTER VEETGRRLKK YAERFNVPFE YNVIAQKWET IQFEDLKIDR NEVIVVNCMN  540
RLKHIPDETV MVNSPRDIVL KLIKKINPDL FIHGVVNGTY NSPFFVTRFR EALFHFSALF  600
DMFEASVPHE DERRLLFEKA QYGRDILNVV ACEGLERVER PETYKQWQVR NVRAGFKQLP  660
LDQELLKRVK RMLKFMGYHN DFSIDEDGHW MLQGWKGRIT RALSFWKKA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	3e-45	317	706	1	378	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_016650699.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016650699.1	0.0	PREDICTED: scarecrow-like protein 14
Swissprot	Q9XE58	0.0	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	M5WFN1	0.0	M5WFN1_PRUPE; Uncharacterized protein
STRING	XP_008223833.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	0.0	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]