PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016650469.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | C3H | ||||||||
Protein Properties | Length: 216aa MW: 22306.2 Da PI: 9.4128 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.3 | 4.9e-07 | 192 | 214 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ Cr f+++G+Ck G++C + H+ XP_016650469.1 192 QRVCR-FFESGHCKKGASCDYLHP 214 68999.8889*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 15.291 | 189 | 216 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.1E-5 | 189 | 215 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.73E-6 | 190 | 214 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.0E-4 | 192 | 214 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.4E-5 | 193 | 214 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
PGFSGVPHSD PWRPPVPSNH TYIQPPAQPQ APWGVGVPDN QSAVPRTGQE NQNTSWVPMA 60 GNPNVTWGGP VPGNTNMNWG PPSQGPGWTA PGQGPVPGNA VTNWVPPGQG PPSVSANPGW 120 APPGQGPTVG NANPGWNAPN ATQNGDRFSN QRDRGSHGDP GFGGGKPWNR QSSFGGGGGG 180 GGGSSRPPFR GQRVCRFFES GHCKKGASCD YLHPDH |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_016650469.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016650469.1 | 1e-147 | PREDICTED: zinc finger CCCH domain-containing protein 19-like, partial | ||||
TrEMBL | A0A251MV39 | 1e-130 | A0A251MV39_PRUPE; Uncharacterized protein | ||||
STRING | XP_008236851.1 | 1e-147 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1435 | 15 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16485.1 | 2e-15 | nucleic acid binding;zinc ion binding;DNA binding |