PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016650096.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 673aa    MW: 73708.8 Da    PI: 8.2751
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016650096.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.11.1e-06267287526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C+ f++ G C+ Gd C +aHg
  XP_016650096.1 267 PCPEFRK-GSCQKGDVCEYAHG 287
                     8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.202.0E-1624172IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484033.42E-1526146IPR020683Ankyrin repeat-containing domain
SMARTSM002484.9E-46999IPR002110Ankyrin repeat
PROSITE profilePS5029716.57369178IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.6566993IPR002110Ankyrin repeat
CDDcd002041.45E-1371167No hitNo description
PfamPF127961.4E-774167IPR020683Ankyrin repeat-containing domain
SMARTSM002480.096104136IPR002110Ankyrin repeat
PROSITE profilePS5008810.018104139IPR002110Ankyrin repeat
PROSITE profilePS5010312.108262289IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-4262288IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-4267288IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.216297321IPR000571Zinc finger, CCCH-type
SMARTSM0035618297320IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 673 aa     Download sequence    Send to blast
MCKGSKDKLS PSNFTMESGF PKQNSVLVEL SASDNLDAFR SEVEEKGLHV DEAGFWYGRR  60
IGSKKMGFEE RTPLMIAAMF GSTKVLKYII QSGKADVNRS CGSDKVTALH CATAGGSTAS  120
LGVVKLLLDA SADANCVNAN GNKPIDLIAP ALKSPCSSRR KTLEMLLKGD MSVMESDQIA  180
NQEGDQQKFP SPQLSKDGSE KKEYPIDISL PDINNGIYGT DEFRMYTFKV KPCSRAYSHD  240
WTECPFVHPG ENARRRDPRK YPYSCVPCPE FRKGSCQKGD VCEYAHGVFE SWLHPAQYRT  300
RLCKDETGCT RKVCFFAHRP EELRPVYAST GSAMPSPRSM SVSAADMAAL SPLALGSSPM  360
SLPTTSTPPM SPLATSSSPK NGALWQNKVN LTPPALQLPG SRLKSALSAR DLDLEMELLG  420
LDSHSNQQQK HQHQQQQQQQ LWDEISRLSS PKCYNXIGDL KPTNLDDAFG SFDPSLLSQL  480
QGVSLKPSTP TQLQSSAHQI RQNINQLRSS YPTNLSSSPV RKPSSFGLDS PGALAAAVMN  540
SRSAAFAQRS HSFIDRGAMS HPRGLTAPAN SSTMMQSSDW GSPGGKLDWG IQGDELNKLK  600
KSASFGFRSS NAGTPTTFMP SAVGEPDVSW VNSLVRDVSS ERSEQKYHHL NKGVHEMLPP  660
WAEQMYIEQE QRA
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_016650096.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016650096.10.0PREDICTED: zinc finger CCCH domain-containing protein 29-like
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLM5XIS20.0M5XIS2_PRUPE; Uncharacterized protein
STRINGXP_008233766.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17963490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.20.0C3H family protein