PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016650009.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family WRKY
Protein Properties Length: 208aa    MW: 23824.8 Da    PI: 9.0371
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016650009.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.24e-29130187159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK vk+s +p sYYrCt+++C+vkk+v+r ++d+++v++tYeg Hnh+
  XP_016650009.1 130 LDDGYRWRKYGQKAVKNSLYP-SYYRCTHHTCSVKKQVQRLSKDTSIVVTTYEGVHNHP 187
                     59*******************.9***********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.3E-30116187IPR003657WRKY domain
SuperFamilySSF1182904.84E-25123188IPR003657WRKY domain
PROSITE profilePS5081125.327125189IPR003657WRKY domain
SMARTSM007743.6E-33130188IPR003657WRKY domain
PfamPF031067.3E-23131187IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MEGHQEQYYP PPSTSSSLPL WPPHPSYLFP SSSTSMNPPP LPEPHHQQQA QLPDIDWISL  60
LSGHHDHQIN TNEPAAMVEV NNKENNVIEA AQEEKGSNKR KGGEGRKISV MKKASRPRFA  120
FQTRSADDIL DDGYRWRKYG QKAVKNSLYP SYYRCTHHTC SVKKQVQRLS KDTSIVVTTY  180
EGVHNHPCEK LMETLTPLLK QMQFLSRF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-22120186774Probable WRKY transcription factor 4
2lex_A9e-22120186774Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00317DAPTransfer from AT2G46130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_016650009.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016650009.11e-157PREDICTED: probable WRKY transcription factor 24 isoform X2
TrEMBLA0A314ZAB51e-124A0A314ZAB5_PRUYE; Putative WRKY transcription factor 24
STRINGXP_008233664.11e-145(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46130.15e-55WRKY DNA-binding protein 43