PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016649949.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 347aa MW: 38975.6 Da PI: 5.1067 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 88 | 5.1e-28 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtfskRrng++KKA+ELS+LCd+++a+i+fs++g+l +s XP_016649949.1 9 KRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSHFS 58 79********************************************9997 PP | |||||||
2 | K-box | 21.9 | 7.2e-09 | 122 | 191 | 9 | 78 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqie 78 + +++ e+lqqe+ L++++++ ++++R + + L+ s+ e ++ e+ L + l+++ ++K+ ll ++++ XP_016649949.1 122 AVSSEIEELQQEIGGLQQQLQMAEEQIRIYEPDPLKIASMAEFESCEKSLMDTLTRVMQRKEYLLSNHLS 191 557789***********************************************************99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 29.885 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.2E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.75E-37 | 2 | 75 | No hit | No description |
SuperFamily | SSF55455 | 1.44E-29 | 2 | 80 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.8E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.8E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.8E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.8E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010152 | Biological Process | pollen maturation | ||||
GO:0080092 | Biological Process | regulation of pollen tube growth | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MGRVKLEIKR IENTTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SGRLSHFSGK 60 RRIEDVFTRY INLPDQEREH AIIFPDHSKH PDLQNKEYLL RTLQQLRSEN DIALQLANSP 120 TAVSSEIEEL QQEIGGLQQQ LQMAEEQIRI YEPDPLKIAS MAEFESCEKS LMDTLTRVMQ 180 RKEYLLSNHL SSYDSSGMPQ VLPGSFENEV AGWLSSGGHN QTQIYDASAP LDHQLRNLSS 240 TLYDPFSQGT SSNADPSSMG ECHVSVTNAS DGELPPWPQA YTNSSGHPSN LMPSGLLPQF 300 QHTMVGSNMP EIMPHEQVEI PVGSPNVQAY NEGAEYHENK VPQLNGH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6bz1_A | 1e-16 | 1 | 84 | 1 | 85 | MEF2 CHIMERA |
6bz1_B | 1e-16 | 1 | 84 | 1 | 85 | MEF2 CHIMERA |
6bz1_C | 1e-16 | 1 | 84 | 1 | 85 | MEF2 CHIMERA |
6bz1_D | 1e-16 | 1 | 84 | 1 | 85 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_016649949.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016649949.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL104 isoform X3 | ||||
Swissprot | Q9LM46 | 1e-132 | AG104_ARATH; Agamous-like MADS-box protein AGL104 | ||||
TrEMBL | M5XW51 | 0.0 | M5XW51_PRUPE; Uncharacterized protein | ||||
STRING | XP_008233985.1 | 0.0 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22130.1 | 1e-124 | AGAMOUS-like 104 |
Publications ? help Back to Top | |||
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