PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_016649948.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 354aa MW: 39827.6 Da PI: 5.2341 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 88 | 5.2e-28 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtfskRrng++KKA+ELS+LCd+++a+i+fs++g+l +s XP_016649948.1 9 KRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSHFS 58 79********************************************9997 PP | |||||||
2 | K-box | 21.8 | 7.6e-09 | 129 | 198 | 9 | 78 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqie 78 + +++ e+lqqe+ L++++++ ++++R + + L+ s+ e ++ e+ L + l+++ ++K+ ll ++++ XP_016649948.1 129 AVSSEIEELQQEIGGLQQQLQMAEEQIRIYEPDPLKIASMAEFESCEKSLMDTLTRVMQRKEYLLSNHLS 198 557889***********************************************************99976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 29.885 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.2E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.24E-29 | 2 | 80 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.59E-37 | 2 | 75 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.0E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.0E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.0E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.0E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010152 | Biological Process | pollen maturation | ||||
GO:0080092 | Biological Process | regulation of pollen tube growth | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 354 aa Download sequence Send to blast |
MGRVKLEIKR IENTTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SGRLSHFSGK 60 RRIEDVFTRY INLPDQEREH AIIFPDHSKH PDLQNKEVRY MTSSNYLLRT LQQLRSENDI 120 ALQLANPTAV SSEIEELQQE IGGLQQQLQM AEEQIRIYEP DPLKIASMAE FESCEKSLMD 180 TLTRVMQRKE YLLSNHLSSY DSSGMPQVLP GSFENEVAGW LSSGGHNQTQ IYDASAPLDH 240 QLRNLSSTLY DPFSQGTSSN ADPSSMGECH VSVTNASDGE LPPWPQAYTN SSGHPSNLMP 300 SGLLPQFQHT MVGSNMPEIM PHEQVEIPVG SPNVQAYNEG AEYHENKVPQ LNGH |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6bz1_A | 1e-16 | 1 | 84 | 1 | 85 | MEF2 CHIMERA |
6bz1_B | 1e-16 | 1 | 84 | 1 | 85 | MEF2 CHIMERA |
6bz1_C | 1e-16 | 1 | 84 | 1 | 85 | MEF2 CHIMERA |
6bz1_D | 1e-16 | 1 | 84 | 1 | 85 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_016649948.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016649948.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL104 isoform X2 | ||||
Swissprot | Q9LM46 | 1e-131 | AG104_ARATH; Agamous-like MADS-box protein AGL104 | ||||
TrEMBL | M5XW51 | 0.0 | M5XW51_PRUPE; Uncharacterized protein | ||||
STRING | EMJ23410 | 0.0 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G22130.1 | 1e-123 | AGAMOUS-like 104 |
Publications ? help Back to Top | |||
---|---|---|---|
|