PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016649916.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 142aa    MW: 16015.4 Da    PI: 4.5747
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016649916.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.32.4e-1227115196
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE.E-SSSEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk.ldgrsefelvv 94 
                     f+ vlt+ + + + +lv+p kf ++      +s + t+ + +g+ We+ +   ++s+ y   ++Wk F+ +n+Lk+gD +vF+ l+  s+++lv+
  XP_016649916.1  27 FDVVLTKTNINHLYQLVVPGKFSATLP---SCS-MPTVLTFRGKNWEMIY--HGSSS-YKRLDNWKVFAIDNNLKVGDACVFEqLEC-SSTRLVF 113
                     566777777788899*******97663...355.6688899*********..66665.55555********************5444.5555554 PP

                     EE CS
              B3  95 kv 96 
                     +v
  XP_016649916.1 114 RV 115
                     43 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.27E-1723116IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.2E-1523117IPR015300DNA-binding pseudobarrel domain
CDDcd100172.41E-1725119No hitNo description
SMARTSM010193.8E-427121IPR003340B3 DNA binding domain
PROSITE profilePS5086310.58827121IPR003340B3 DNA binding domain
PfamPF023622.1E-1027114IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MGDLLTSNPV IELEGDEFWP LSGKPFFDVV LTKTNINHLY QLVVPGKFSA TLPSCSMPTV  60
LTFRGKNWEM IYHGSSSYKR LDNWKVFAID NNLKVGDACV FEQLECSSTR LVFRVQILRG  120
DIPSEFLDKL DGDNVDAPIV LE
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_016649916.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016649915.11e-102PREDICTED: B3 domain-containing protein Os04g0386900-like isoform X1
RefseqXP_016649916.11e-102PREDICTED: B3 domain-containing protein Os04g0386900-like isoform X2
TrEMBLM5X1G43e-93M5X1G4_PRUPE; Uncharacterized protein
STRINGXP_008232177.12e-99(Prunus mume)