PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016649791.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | LBD | ||||||||
Protein Properties | Length: 194aa MW: 21194 Da PI: 8.482 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 56.7 | 6.9e-18 | 63 | 114 | 49 | 100 |
DUF260 49 lpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +pe++r da++slvyeA++r+rdPvyG++g i++lqqq+++l+ael++++ e XP_016649791.1 63 VPESQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQSLQAELNAVRGE 114 7999*******************************************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 8.579 | 15 | 115 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.1E-16 | 62 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MSREREISDE IGKKIKRETD ASSHHRMGRR HMLGPPGTLN TITPCAACKL LRRRCAQECS 60 FEVPESQRAD AANSLVYEAN VRLRDPVYGC MGAISALQQQ VQSLQAELNA VRGEILKYKY 120 REANLLPSNS HHMALFSTSG AVSIASLPQT PQPPPPPPPP PPLPPTSSSS SMYTNQPSTA 180 DYSTLSSENV SFFG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-22 | 36 | 128 | 3 | 124 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-22 | 36 | 128 | 3 | 124 | LOB family transfactor Ramosa2.1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_016649791.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CR938710 | 6e-34 | CR938710.1 Medicago truncatula chromosome 5 clone mth2-170k9, COMPLETE SEQUENCE. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016649791.1 | 1e-142 | PREDICTED: LOB domain-containing protein 15 | ||||
Swissprot | Q8L5T5 | 5e-59 | LBD15_ARATH; LOB domain-containing protein 15 | ||||
TrEMBL | A0A251QLQ4 | 1e-110 | A0A251QLQ4_PRUPE; Uncharacterized protein | ||||
STRING | XP_009369256.1 | 1e-101 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2298 | 34 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 6e-60 | LOB domain-containing protein 15 |
Publications ? help Back to Top | |||
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