PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016649376.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family NF-YA
Protein Properties Length: 339aa    MW: 37596 Da    PI: 9.4526
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016649376.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA101.58e-32180236158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     dep+YVNaKQy++Il+RRq Rakle+++kl  k rkpylheSRh hAl+R+RgsgGrF
  XP_016649376.1 180 DEPIYVNAKQYRAILRRRQYRAKLEAQNKL-VKIRKPYLHESRHVHALKRARGSGGRF 236
                     79****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005218.8E-36178239IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.126179239IPR001289Nuclear transcription factor Y subunit A
PfamPF020456.6E-26181236IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006167.5E-23182204IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860184204IPR018362CCAAT-binding factor, conserved site
PRINTSPR006167.5E-23213236IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MQNLYKQNSD IVSAHSTFPF IVGSSSWENS TETHVQQSTS KSLIFKMGLP LQNCHNRKQS  60
GIHFQDQDSS STQSTGQSHS EVDSMKEGNP CGEGIVSAQS AYNERQGKPV GGHLKSLSSM  120
ASQGFVFPSQ LDFSHPMGHI PFHYAEPYFG SLLAAACGPQ ATVMGITPAR VPLPLDLTED  180
EPIYVNAKQY RAILRRRQYR AKLEAQNKLV KIRKPYLHES RHVHALKRAR GSGGRFLNMK  240
KVQDSKPNTT NHRVDVSGSA QLHLTRNMSE SEVHEPENYR DGASTTSCSE VTSTSNSDNI  300
FPRQDFRFSG YPSHIGGTMQ VPFVDVRGGG NQHHISLLR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-19180240262NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_016649376.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016649376.10.0PREDICTED: nuclear transcription factor Y subunit A-3 isoform X2
TrEMBLA0A314XXE20.0A0A314XXE2_PRUYE; Nuclear transcription factor Y subunit A-3 isoform X1
STRINGXP_008228224.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.12e-61nuclear factor Y, subunit A3