PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016649371.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family NF-YA
Protein Properties Length: 344aa    MW: 38208.6 Da    PI: 9.453
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016649371.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA101.58.2e-32185241158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     dep+YVNaKQy++Il+RRq Rakle+++kl  k rkpylheSRh hAl+R+RgsgGrF
  XP_016649371.1 185 DEPIYVNAKQYRAILRRRQYRAKLEAQNKL-VKIRKPYLHESRHVHALKRARGSGGRF 241
                     79****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005218.8E-36183244IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.126184244IPR001289Nuclear transcription factor Y subunit A
PfamPF020456.7E-26186241IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006167.6E-23187209IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860189209IPR018362CCAAT-binding factor, conserved site
PRINTSPR006167.6E-23218241IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MQNLYKQNSD IVSAHSTFPF IVGSSSWENS TETHVQQSTS KSLIFKMGLP LQNCHNRKQS  60
GIHFQDQDSS STQSTGQSHS EVDSMKEGNP CGEGIVSAQS AYNERQGKPV GGHLKSLSSM  120
ASQGFVFPSQ LDFSHPMGHI PFHYAEPYFG SLLAAACGPQ ATIHHPQVMG ITPARVPLPL  180
DLTEDEPIYV NAKQYRAILR RRQYRAKLEA QNKLVKIRKP YLHESRHVHA LKRARGSGGR  240
FLNMKKVQDS KPNTTNHRVD VSGSAQLHLT RNMSESEVHE PENYRDGAST TSCSEVTSTS  300
NSDNIFPRQD FRFSGYPSHI GGTMQVPFVD VRGGGNQHHI SLLR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-19185245262NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_016649371.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016649370.10.0PREDICTED: nuclear transcription factor Y subunit A-3 isoform X1
RefseqXP_016649371.10.0PREDICTED: nuclear transcription factor Y subunit A-3 isoform X1
RefseqXP_016649372.10.0PREDICTED: nuclear transcription factor Y subunit A-3 isoform X1
RefseqXP_016649373.10.0PREDICTED: nuclear transcription factor Y subunit A-3 isoform X1
RefseqXP_016649374.10.0PREDICTED: nuclear transcription factor Y subunit A-3 isoform X1
RefseqXP_016649375.10.0PREDICTED: nuclear transcription factor Y subunit A-3 isoform X1
TrEMBLA0A314XXE20.0A0A314XXE2_PRUYE; Nuclear transcription factor Y subunit A-3 isoform X1
STRINGXP_008228224.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.15e-65nuclear factor Y, subunit A3