PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016649339.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | G2-like | ||||||||
Protein Properties | Length: 239aa MW: 27597.7 Da PI: 7.1264 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 98.3 | 5.5e-31 | 22 | 74 | 2 | 54 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 prlrWtp+LHe Fveave+LGG++kAtPk+il++m+vkgL ++hvkSHLQ+YR XP_016649339.1 22 PRLRWTPQLHELFVEAVESLGGKHKATPKRILQTMSVKGLKISHVKSHLQMYR 74 9**************************************************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.002 | 18 | 78 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.5E-28 | 19 | 74 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.54E-14 | 21 | 75 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.3E-23 | 22 | 74 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.5E-8 | 23 | 74 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MNEEMKSYQK IGVRNYQKSD HPRLRWTPQL HELFVEAVES LGGKHKATPK RILQTMSVKG 60 LKISHVKSHL QMYRGVNDNA YSQDHSSNVF SIFSPQTQTQ RPSENYYLRY EQHVMFSETD 120 EETKGRILTK EEAAGKQQNQ VLQAQKYHLH QTSFKKNAHT PELSRLSMNE ETCQLYGFCE 180 LSLSFNPTVT TMAQFRKESE LWPSADEHNT SQSSSTGNFS NIQDFQEVGS NDINLDLTI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 4e-18 | 23 | 74 | 4 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 4e-18 | 23 | 74 | 4 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 4e-18 | 23 | 74 | 4 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 4e-18 | 23 | 74 | 4 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 4e-18 | 23 | 74 | 4 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 4e-18 | 23 | 74 | 4 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 4e-18 | 23 | 74 | 4 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 4e-18 | 23 | 74 | 4 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_016649339.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016649339.1 | 0.0 | PREDICTED: putative Myb family transcription factor At1g14600 isoform X2 | ||||
TrEMBL | A0A251Q553 | 1e-174 | A0A251Q553_PRUPE; Uncharacterized protein | ||||
STRING | XP_008229586.1 | 1e-162 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02060.1 | 1e-27 | G2-like family protein |