PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016649326.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 284aa    MW: 32518.3 Da    PI: 5.8751
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016649326.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.94.6e-131461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd +l + +   G ++W+ +++  g+ R++k+c++rw +yl
   XP_016649326.1 14 RGPWTIEEDHKLMNFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYL 61
                     89******************************99************97 PP
2Myb_DNA-binding49.41.1e-1567110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++T+ E+ ++++++   G++ W++Ia++++ gRt++++k++w++
   XP_016649326.1  67 RGSFTETEENQIIQLHSCIGNR-WSKIASHFP-GRTDNEIKNHWNT 110
                      89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.0E-21564IPR009057Homeodomain-like
PROSITE profilePS5129413.517961IPR017930Myb domain
SuperFamilySSF466893.3E-2811108IPR009057Homeodomain-like
SMARTSM007176.3E-61363IPR001005SANT/Myb domain
PfamPF002496.5E-111461IPR001005SANT/Myb domain
CDDcd001671.24E-41661No hitNo description
PROSITE profilePS5129425.43862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-2565117IPR009057Homeodomain-like
SMARTSM007172.5E-1466114IPR001005SANT/Myb domain
PfamPF002491.6E-1467110IPR001005SANT/Myb domain
CDDcd001676.24E-1069110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MGRQPCCDKV GLKRGPWTIE EDHKLMNFIL NNGIHCWRMV PKLAGLLRCG KSCRLRWINY  60
LRPDLKRGSF TETEENQIIQ LHSCIGNRWS KIASHFPGRT DNEIKNHWNT RIKKRLKHLG  120
VDPLTHKPIE QKENIEENKQ TITREDSSSS ISQGQEESQD SGLEAKLQQD GNGNRGFPEF  180
NDKLQNVPEL AGFDETNDLL KNYEMFCGSL DLGTFLLNQG TNINNTSTSN SYSTSSFSVE  240
ESNNPSISIG ESIQEHSLQK WMDSVDSMLS WDGFNNLEQD LFFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-28121165108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00510DAPTransfer from AT5G14340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_016649326.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0347376e-44KM034737.1 Jatropha curcas clone JcMYB118 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016649326.10.0PREDICTED: myb-related protein 315-like
TrEMBLA0A314URT60.0A0A314URT6_PRUYE; Myb-related protein 315-like
STRINGXP_008230923.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66253150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.13e-83myb domain protein 40