PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016649213.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 704aa    MW: 78364 Da    PI: 6.4617
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016649213.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.43.3e-202579256
                    T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    +k +++t+eq+++LeelF+++ +p+ ++r++L+++lgL+ rq+k+WFqN+R++ k
  XP_016649213.1 25 KKYHRHTSEQIQRLEELFKECAHPDDNQRQQLSRELGLEPRQIKFWFQNKRTQTK 79
                    78999**********************************************9987 PP
2START139.53.4e-442244453206
                     HHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEE CS
           START   3 aeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlev 84 
                     a +a +el+k  + +ep+W ks+      +n+d + ++f++ +       ++e +++sgvv   +++lv ++ld++ +W   ++     a+t++v
  XP_016649213.1 224 AARAIEELLKSFEINEPLWIKSPgdgrYLLNRDSYDKIFPRPNHfksssARVESSKDSGVVSVSAVQLVDIFLDSS-KWEDLFPtiitNAKTIQV 317
                     578999*****************998878999999999988666899999**************************.**999999999******* PP

                     ECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE- CS
           START  85 issg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdl 172
                     ++sg      g lqlm+ ++  lsplv  Rdf+f+R+++q + g+wvivdvS d +++   s+   R+ +lpSg++i++++ng skvtw+ehv++
  XP_016649213.1 318 LESGmvgnqsGRLQLMYEQMHILSPLVLsRDFYFLRHCQQIEIGTWVIVDVSYDFPKET--SACQTRSWRLPSGCMIKDMQNGCSKVTWIEHVEV 410
                     ***************************99***************************996..579999999************************* PP

                     -SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 173 kgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                     ++++  h l+r l+ s +a ga +w  tlqr ce+
  XP_016649213.1 411 DDKTQtHRLYRDLICSNVAYGAERWIVTLQRMCER 445
                     **9998***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.68E-191282IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-211283IPR009057Homeodomain-like
PROSITE profilePS5007117.1192181IPR001356Homeobox domain
SMARTSM003895.5E-172385IPR001356Homeobox domain
PfamPF000469.0E-182579IPR001356Homeobox domain
CDDcd000861.94E-172582No hitNo description
PROSITE patternPS0002705679IPR017970Homeobox, conserved site
PROSITE profilePS5084843.691213448IPR002913START domain
SuperFamilySSF559611.09E-29214447No hitNo description
CDDcd088755.37E-107220444No hitNo description
SMARTSM002343.7E-30222445IPR002913START domain
PfamPF018525.2E-36224445IPR002913START domain
Gene3DG3DSA:3.30.530.204.2E-10271409IPR023393START-like domain
SuperFamilySSF559611.65E-16465689No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 704 aa     Download sequence    Send to blast
MELPKGNAGV SGDEQEPSSS RRGNKKYHRH TSEQIQRLEE LFKECAHPDD NQRQQLSREL  60
GLEPRQIKFW FQNKRTQTKA QNERADNTVL RVNNERIQCE NFAFREALKN VICPTCGGPP  120
FGEEERQLCL QKLQLENAQL REEHDKVASL LSKYIGKPIS HIDSLASAAG SSFDFSPGSS  180
MNQGMGSPPL SLNPTNPAVA NNAALAYQLK EIPEMEKTHM ADTAARAIEE LLKSFEINEP  240
LWIKSPGDGR YLLNRDSYDK IFPRPNHFKS SSARVESSKD SGVVSVSAVQ LVDIFLDSSK  300
WEDLFPTIIT NAKTIQVLES GMVGNQSGRL QLMYEQMHIL SPLVLSRDFY FLRHCQQIEI  360
GTWVIVDVSY DFPKETSACQ TRSWRLPSGC MIKDMQNGCS KVTWIEHVEV DDKTQTHRLY  420
RDLICSNVAY GAERWIVTLQ RMCERFDYSM DEVAPSCEFG GVITTPEGRR STMKLSHRMV  480
KNFCGMLSMA GKLDFPQLSE VHNSGVRVSV RKNTEPGQPN GMVVSVATSL WLPLPSHNVF  540
NFFRDEETRL QWDVLCNGNP VHEVTRISTG THPGNCISII RPFIPTENNM VMLQESYIDS  600
LGALVIYAPV DIPALNIAVC GEDSSKIPIL PSGFVISGDG HPETGPAASN GRSGGSLLTV  660
AFQILVSCPA SSKQLNMESV ATVNTLISST VQKIKAALNC SGLD
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_016649213.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016649213.10.0PREDICTED: homeobox-leucine zipper protein ROC8
SwissprotQ69T580.0ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8
TrEMBLA0A251PUX60.0A0A251PUX6_PRUPE; Uncharacterized protein
STRINGXP_008227910.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10263398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0homeodomain GLABROUS 11