PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016649071.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

WRKY

Protein Properties

Length: 226aa MW: 26013.6 Da PI: 8.6973

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016649071.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	104.6	5.1e-33	147	205	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+++fprsYYrCt++gC+vkk+v+r ++d+ +v++tYeg H+h+ XP_016649071.1 147 LDDGYRWRKYGQKAVKNNKFPRSYYRCTYQGCNVKKQVQRLTQDEGIVVTTYEGMHTHP 205 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	4.6E-34	132	205	IPR003657	WRKY domain
SuperFamily	SSF118290	7.59E-30	139	206	IPR003657	WRKY domain
PROSITE profile	PS50811	29.987	142	207	IPR003657	WRKY domain
SMART	SM00774	1.1E-39	147	206	IPR003657	WRKY domain
Pfam	PF03106	8.5E-27	148	205	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MEKYQMFFPC SSSTSSANYD PMIPISATNN ITTDDHHMGM GSSQVYNYFD GRDQSSNGLL 60 ALXDNQKETT LGERREVLIN KDHHRYLQQQ YSDPTTTASA NININNVVVG ADQNPHEATN 120 SGNKNKGEKK TRKPKYAFQT RSQVDILDDG YRWRKYGQKA VKNNKFPRSY YRCTYQGCNV 180 KKQVQRLTQD EGIVVTTYEG MHTHPIEKPS DNFEHILNQM QIYTPF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	5e-27	137	206	7	76	Probable WRKY transcription factor 4
2lex_A	5e-27	137	206	7	76	Probable WRKY transcription factor 4
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_016649071.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016649071.1	1e-171	PREDICTED: LOW QUALITY PROTEIN: probable WRKY transcription factor 45
TrEMBL	M5WY44	1e-153	M5WY44_PRUPE; Uncharacterized protein
STRING	EMJ18136	1e-154	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1156	34	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13080.1	2e-57	WRKY DNA-binding protein 75