PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016649012.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | TCP | ||||||||
Protein Properties | Length: 184aa MW: 20801.2 Da PI: 6.5998 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 113.1 | 4e-35 | 59 | 153 | 2 | 83 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............ssssaseceaesssssa 82 + kkdrhski T++g+RdRRvRls+++a++fFdLqd LGfdk+skt+eWLl+++ +aik+l s +s+sec++++ s+ XP_016649012.1 59 PMKKDRHSKIFTAQGLRDRRVRLSINVARQFFDLQDLLGFDKASKTLEWLLTKSRRAIKQLGTRnkhltcststgrskSLTSSSECDDDDVD-SD 152 679**********************************************************8887888777666555544444556222222.22 PP TCP 83 s 83 XP_016649012.1 153 T 153 2 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 9.0E-37 | 60 | 152 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 33.606 | 61 | 119 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048831 | Biological Process | regulation of shoot system development |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MAPPLPQSLT HLGVSSNTVP PSINADDHHH YHNYYGAINN DNIFPHFLHS SREDIVAPPM 60 KKDRHSKIFT AQGLRDRRVR LSINVARQFF DLQDLLGFDK ASKTLEWLLT KSRRAIKQLG 120 TRNKHLTCST STGRSKSLTS SSECDDDDVD SDTNEVENVA SKEKEIYIEP PDPLCFTVGQ 180 ELQE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-15 | 66 | 119 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 2e-15 | 66 | 119 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00215 | DAP | Transfer from AT1G67260 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_016649012.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016649012.1 | 1e-136 | PREDICTED: transcription factor CYCLOIDEA-like | ||||
TrEMBL | M5XFN8 | 1e-104 | M5XFN8_PRUPE; Uncharacterized protein (Fragment) | ||||
STRING | XP_008230423.1 | 1e-119 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1738 | 32 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67260.2 | 1e-29 | TCP family protein |