PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016648871.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | LBD | ||||||||
Protein Properties | Length: 151aa MW: 17003.2 Da PI: 6.884 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 128.8 | 2.4e-40 | 6 | 106 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +Ca+Ck+lrrkCa+dCvlapyfp+++p++fa+vhk+FGa n++k+l++lp + re+a+++++yeA +r++dP yG+v++i++lqq+l q+++e+a XP_016648871.1 6 RCAGCKFLRRKCAQDCVLAPYFPSSNPERFACVHKIFGAGNITKMLQQLPVHVREAAADCMFYEASVRVEDPTYGCVKIISQLQQDLFQAQSEMA 100 6********************************************************************************************** PP DUF260 96 llkeel 101 ++k+++ XP_016648871.1 101 KTKAQI 106 *99885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.188 | 5 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.4E-38 | 6 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 151 aa Download sequence Send to blast |
MANPTRCAGC KFLRRKCAQD CVLAPYFPSS NPERFACVHK IFGAGNITKM LQQLPVHVRE 60 AAADCMFYEA SVRVEDPTYG CVKIISQLQQ DLFQAQSEMA KTKAQIAFYN AQQQLNQQQQ 120 NMVDGVDDNY QQDLHSESSR LGLDGHFYSL G |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-34 | 7 | 109 | 12 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-34 | 7 | 109 | 12 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_016648871.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016648871.1 | 1e-111 | PREDICTED: LOB domain-containing protein 24-like | ||||
Swissprot | P59468 | 1e-43 | LBD24_ARATH; LOB domain-containing protein 24 | ||||
TrEMBL | A0A314Y6I0 | 1e-95 | A0A314Y6I0_PRUYE; LOB domain-containing protein 24-like | ||||
STRING | EMJ18569 | 7e-96 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3697 | 30 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26660.1 | 2e-44 | LOB domain-containing protein 24 |