PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016648600.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family NAC
Protein Properties Length: 317aa    MW: 35771.2 Da    PI: 8.4839
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016648600.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM109.15.1e-34571971128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee...vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk...... 79 
                     lp+G++F+Ptd+e++ ++L++kv +++      ++  e   +++   +i++++P++Lp  v+++ +  +fF++ +k+y+tg+rk+r+++      
  XP_016648600.1  57 LPAGVKFDPTDQEIL-QHLEAKVLSDTrklhplID--EfipTLEGEnGICYTHPEKLP-GVNKDGQIRHFFHRPSKAYTTGTRKRRKVHteedgs 147
                     799***********9.99****9999956644322..22222333336**********.666777788******************744446555 PP

             NAM  80 sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                     + +W++tgk+++vl+ +g+++g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  XP_016648600.1 148 ETRWHKTGKTRPVLV-GGAVKGFKKILVLYtnYGRQRKPEKTNWVMHQYHL 197
                     778************.9*************66589**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-3851216IPR003441NAC domain
PROSITE profilePS5100533.9157216IPR003441NAC domain
PfamPF023651.6E-1558197IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MTWCNDSDDE RAIQIITPPP PPPPSHNNNE FRNITCPSCG HHIEFQDQAG IHDLPGLPAG  60
VKFDPTDQEI LQHLEAKVLS DTRKLHPLID EFIPTLEGEN GICYTHPEKL PGVNKDGQIR  120
HFFHRPSKAY TTGTRKRRKV HTEEDGSETR WHKTGKTRPV LVGGAVKGFK KILVLYTNYG  180
RQRKPEKTNW VMHQYHLGNN EEEKDGELVV SKVFYQTQPR QCGSSIKDVP MFDHHKGVNI  240
RSGHGHDPLP IAKKAGLVEY YNPGGGFINY DHHNLHNQGG HNRESPPQLI PNLVVQGDGS  300
SFIRLTADAS KGKLERK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00459DAPTransfer from AT4G28500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_016648600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1981190.0KF198119.1 Malus hupehensis NAC domain protein (NAC43) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008225157.10.0PREDICTED: NAC domain-containing protein 73-like
RefseqXP_016648600.10.0PREDICTED: NAC domain-containing protein 73-like
SwissprotO494591e-124NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A314XGK90.0A0A314XGK9_PRUYE; NAC domain-containing protein 73-like
STRINGXP_008225157.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-125NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]