PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016648495.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family WRKY
Protein Properties Length: 546aa    MW: 59665.6 Da    PI: 6.4658
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016648495.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY941.1e-29313371259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dg++WrKYGqK+ kg+++pr+YYrCt+  gCpv+k+v+r+aed +++++tYeg+Hnh+
  XP_016648495.1 313 SDGCQWRKYGQKMAKGNPCPRAYYRCTMGtGCPVRKQVQRCAEDRTILVTTYEGHHNHP 371
                     7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.8E-33297373IPR003657WRKY domain
SuperFamilySSF1182901.01E-27305373IPR003657WRKY domain
PROSITE profilePS5081129.677307373IPR003657WRKY domain
SMARTSM007749.6E-36312372IPR003657WRKY domain
PfamPF031067.4E-26314371IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MESAASDHSI HNCRSIEQPL LSPETAVDHD HHGKRIVDEL DFFADNKGRL MEMRDQTVEV  60
QEEGAHDHHG VGQEKQLPDV NTGLNLLTTY TSSDKSSMDD GTSSSHNMED KHRTNELAVL  120
QAELGRMNVE NQRLRVMISQ VNNNYQALQV QIVTLMQRQQ NQKVDHQTPE QHKMNNNGSV  180
VVEEKQMMNG FNHIVPRQFM DMGRAEKDEL SQCSLEGCRS QDCSGSSPRN DIVESMECCK  240
STSHVLHRDL SGRISTTNGG EDSPDQEFQG WVPKKVSKMM SPRHVDQASS ETMSMIKKAR  300
VSVRARSEAS MISDGCQWRK YGQKMAKGNP CPRAYYRCTM GTGCPVRKQV QRCAEDRTIL  360
VTTYEGHHNH PLPPAAMAMA STTSAAASML LSGSMPSADG LISSNSFLAR SALQNCPPSL  420
ATLSASAPFP TVTLDLTRTP TSSEMPLGQP NQLPPSFPQN MMPVPQILGQ ALSSQSTFSV  480
LESFPGLDSA THSLADKVNA ATAAITADPN FTAALVAAIT SIVGNVHSNN NTNGNITTRN  540
NSDSNT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-22299375176WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_016648495.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016648495.10.0PREDICTED: probable WRKY transcription factor 31
TrEMBLA0A251PP600.0A0A251PP60_PRUPE; Uncharacterized protein
STRINGXP_008226947.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF86634121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.11e-103WRKY family protein