PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016648144.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | GeBP | ||||||||
Protein Properties | Length: 404aa MW: 45167.6 Da PI: 9.5865 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 104.8 | 6.6e-33 | 175 | 266 | 1 | 95 |
DUF573 1 klfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 klfqr+ws++Dei++L G+id+ +k+g++p+ d+ af +f+kks++++v+k+ql +KirrLKkK++++v+k gke + k+h+qk+f+l kk+ XP_016648144.1 175 KLFQRIWSNDDEITILEGMIDYSTKKGANPYYDMGAFRDFIKKSLKADVNKTQLQDKIRRLKKKYEMNVAK---GKEYNPIKPHEQKVFDLXKKV 266 579********************************************************************...9****************9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 3.3E-30 | 177 | 266 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 404 aa Download sequence Send to blast |
MAPKRPSSLD EPPTASYLEE KVASSEEEVH KEKEEESRSI FESESKEPEP PKATPTHVAE 60 KKPPPKKLNS TTVNSKQQSS SSGSXSESES DSEXDKDMVV KPISSKPMED KLKTKKPISK 120 ASATTTPAAR AGWKRPSESD PKDSKRPKKK IPDPDQEPDY AGEETKKAGG DDSKKLFQRI 180 WSNDDEITIL EGMIDYSTKK GANPYYDMGA FRDFIKKSLK ADVNKTQLQD KIRRLKKKYE 240 MNVAKGKEYN PIKPHEQKVF DLXKKVXSSD ERSIGVSGLS EXSKSNGKAR TNQKGNNKTL 300 ASLKAELLSS SKPSKECEKV EFGYESLSEV IGYDKGFSEI GLPEGVMKQG LELIGGARRA 360 ELKEKXKKLH AAELDLFVKR SELIRDQAKV ILETLYYMSI KTLD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_016648144.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016648144.1 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: mediator-associated protein 1 | ||||
TrEMBL | A0A314XJQ1 | 0.0 | A0A314XJQ1_PRUYE; GLABROUS1 enhancer-binding protein-like | ||||
STRING | EMJ16049 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1831 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61730.1 | 5e-22 | DNA-binding storekeeper protein-related transcriptional regulator |