PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016648082.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 335aa    MW: 38092.8 Da    PI: 4.7143
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016648082.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.55.6e-1998152357
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                     k++++t +q++ Le+ Fe ++++  e++++LAk+lgL+ rqV +WFqNrRa+ k+
  XP_016648082.1  98 KKRRLTVDQVQFLEKNFEVENKLEPERKAQLAKELGLQPRQVAIWFQNRRARFKN 152
                     56689***********************************************995 PP
2HD-ZIP_I/II127.17.8e-4198189293
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     kkrrl+ +qv++LE++Fe e+kLeperK++la+eLglqprqva+WFqnrRAR+k+kqlEk+y++Lk+++d+lk+++++L ke+ +L++e+++
  XP_016648082.1  98 KKRRLTVDQVQFLEKNFEVENKLEPERKAQLAKELGLQPRQVAIWFQNRRARFKNKQLEKEYDSLKASFDKLKADHDNLLKENGSLKNEIDS 189
                     9**************************************************************************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.67E-1985155IPR009057Homeodomain-like
PROSITE profilePS5007117.31393153IPR001356Homeobox domain
SMARTSM003896.3E-1895157IPR001356Homeobox domain
CDDcd000862.20E-1796154No hitNo description
PfamPF000462.3E-1698151IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.2E-19100161IPR009057Homeodomain-like
PRINTSPR000312.2E-6124133IPR000047Helix-turn-helix motif
PROSITE patternPS000270128151IPR017970Homeobox, conserved site
PRINTSPR000312.2E-6133149IPR000047Helix-turn-helix motif
PfamPF021831.5E-16153194IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MLFFKTKSSL ALLTFLSLFG FPLLPPLFML LISVPLCKQN GETFINRRKI EKTPPSSNSV  60
VNFESASGED SLDRSFFRPI DKENGDDDYD ASLNQPGKKR RLTVDQVQFL EKNFEVENKL  120
EPERKAQLAK ELGLQPRQVA IWFQNRRARF KNKQLEKEYD SLKASFDKLK ADHDNLLKEN  180
GSLKNEIDSL KDMLILKDKG KPGKRNLELH DANNIILSDV KPQSATPNAA SDNVPMVVCK  240
QEDASSAKSD VFDSDSPHCT ENHSSLLEPA DSSHVFEPAE QSDFSQDEDD DLSRTLLPPP  300
YFLKLEDSCY DEPPASSSNF VFPMEDQQPF CFWPY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145153RRARFKNKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_016648082.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016648082.10.0PREDICTED: homeobox-leucine zipper protein HAT5 isoform X2
TrEMBLA0A251R3Q50.0A0A251R3Q5_PRUPE; Uncharacterized protein
TrEMBLA0A314UJX00.0A0A314UJX0_PRUYE; Homeobox-leucine zipper protein HAT5 isoform X3
STRINGXP_008221688.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.14e-39HD-ZIP family protein