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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
XP_016647974.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 278aa MW: 30599.1 Da PI: 10.2745 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_016647974.1 | genome | BGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 341.4 | 2.2e-104 | 1 | 278 | 1 | 301 |
GAGA_bind 1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki....rernlalsekkaavaerd.........maflqrdkalaernkalverdnkll 82
mddd+ + rn+gyyep+ +k +lglqlmss+aerd+k r+ + + ++++a+++rd ++ +rd+++++ ++k+l
XP_016647974.1 1 MDDDALNMRNWGYYEPS--FKGHLGLQLMSSMAERDTKAfvpgRDPAV-MVSSNGAFHPRDcvvsdapvpLNY-MRDSWVNQ--------RDKFL 83
9***9999*******99..*******************9999999998.99**********999999999999.99999999........789** PP
GAGA_bind 83 alllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkk 177
++++++ + + vl++t+ ++slq l+++ e+ ++p+ +ke ++kkr + pk++k kk++k +k++
XP_016647974.1 84 NMMPANPN--------YAVLPETSGAHSLQI-----LQPPDSSRDERVARIEEPV-----ANKEGGTSKKRGGGGAPKTPKVKKPRK----PKDN 156
***96654........899********9999.....5544444223332233333.....333444444455555555555555555....2223 PP
GAGA_bind 178 vkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekL 272
+++s+ +r+k kks+d+v+ng+++D+s++P+PvCsCtGa++qCY+WG+GGWqSaCCtt++S+yPLP+stkrrgaRiagrKmSqgafkk+LekL
XP_016647974.1 157 -NNPSV-PRVKPAKKSLDVVINGINMDISGIPIPVCSCTGAPQQCYRWGCGGWQSACCTTNVSMYPLPMSTKRRGARIAGRKMSQGAFKKVLEKL 249
.33443.689************************************************************************************* PP
GAGA_bind 273 aaeGydlsnpvDLkdhWAkHGtnkfvtir 301
aaeGy+++np+DL+ hWA+HGtnkfvtir
XP_016647974.1 250 AAEGYNFANPIDLRGHWARHGTNKFVTIR 278
****************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0050793 | Biological Process | regulation of developmental process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 278 aa
Download sequence Send
to blast |
MDDDALNMRN WGYYEPSFKG HLGLQLMSSM AERDTKAFVP GRDPAVMVSS NGAFHPRDCV 60
VSDAPVPLNY MRDSWVNQRD KFLNMMPANP NYAVLPETSG AHSLQILQPP DSSRDERVAR 120
IEEPVANKEG GTSKKRGGGG APKTPKVKKP RKPKDNNNPS VPRVKPAKKS LDVVINGINM 180
DISGIPIPVC SCTGAPQQCY RWGCGGWQSA CCTTNVSMYP LPMSTKRRGA RIAGRKMSQG 240
AFKKVLEKLA AEGYNFANPI DLRGHWARHG TNKFVTIR
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KM244747 | 0.0 | KM244747.1 Malus hupehensis basic pentacysteine 1 protein (BPC1) mRNA, complete cds. |
| GenBank | KP657685 | 0.0 | KP657685.1 Malus baccata basic pentacysteine 1 protein (BPC1) mRNA, complete cds. |
