PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016647854.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 1035aa MW: 111728 Da PI: 4.3227

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016647854.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.1	0.0013	20	42	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg +F++ + rH r H XP_016647854.1 20 HVCHKCGWPFPNAHPSARHRRAH 42 79*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	22	42	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1035 aa Download sequence Send to blast
MDSQDLARTH SSGLDSHGVH VCHKCGWPFP NAHPSARHRR AHKRICGTID GYKLAGSEKN 60 THVNDSDDDH SDEELKTPNL VSVRSEDVVF SDAVAEFSDS ASGAVTSEGL ENVRASEINL 120 ERVAKNGLNV IQSLNDGEIT ENTTNQLGAQ ELQGSLSTSN IISMTSSESA LQDDRNHSED 180 DVQPIQFEML ADASEDSKKT HATDSVIESS LLSAPQEDKI DGIATSNLDG DLPYTVISNK 240 VVSETAEGVS KLEGTVEMTS DSLRDNEVVP SEKEYTHAYD LYIPQIDPSP EVESVEHVNA 300 SVDTVENKVD TTDRIHFSNS GGLTESSNWE KGEGNPNVHV LSVPDDTHVV GNPEVMLEGF 360 KNHKEKKLDQ PIFLDSWEQF NDEENDVKCG GSSKPMVKEV PAEEEANVSH IQIKSTENQR 420 SDEIAAPADA NESLQVKFSE SDTNSLIASS SAAINQTRHL DDLDGNGKDE KCDLSAVHSS 480 KGPAEENSVE NDDAGDYEKG IFENCNIIGD SGYHETENFK LAGDDNSKES TENFFAKDPV 540 SNLESASRLS ELEVDPVSSS HEVGDAGDYE KDKTERFDII GDDGDHEKAE KYVLTGDDYR 600 KVSTEKIVAE NSITSLESAS SLSELQANLA TNLNDDDPGD HDGGEIEKSI ISGNESSEGP 660 VEKNLLVKPT LNLDSAIDLV ESKTVAEDAV DGSMLKLVDT RHKPLNSSSN SSGVGLNIVS 720 DHGPNAESSQ KSSEGCGMKE LGLSALDAES SVPSFTAEDN GSREFHGVSS GLSSQSFQEE 780 SDKNFVKQQL SSSALDVVDS NSQTDSLEGN WGSVSGTVLS IQSDAQAVPP ADSQTSVEEK 840 KSKAASERQY PEKSDMFEAP SFMTLVEPRG VNDQKATAAE IHTAHNPEQP KPAPLQAGWF 900 PSISHVVNES PGRKKNEEII AKVTNWSTGK QHTALKNLLG EAYLENKAKS PTQKESQTPA 960 PQRDDKAVKV KDGGPGATTV NSILGPESPT GQASKKENAK EWNSPARYPS DIKSEKKKVK 1020 GRPYWAQFVC CSSVH

Sequence ? help Back to Top

Protein Sequence Length: 1035 aa Download sequence Send to blast

MDSQDLARTH SSGLDSHGVH VCHKCGWPFP NAHPSARHRR AHKRICGTID GYKLAGSEKN  60
THVNDSDDDH SDEELKTPNL VSVRSEDVVF SDAVAEFSDS ASGAVTSEGL ENVRASEINL  120
ERVAKNGLNV IQSLNDGEIT ENTTNQLGAQ ELQGSLSTSN IISMTSSESA LQDDRNHSED  180
DVQPIQFEML ADASEDSKKT HATDSVIESS LLSAPQEDKI DGIATSNLDG DLPYTVISNK  240
VVSETAEGVS KLEGTVEMTS DSLRDNEVVP SEKEYTHAYD LYIPQIDPSP EVESVEHVNA  300
SVDTVENKVD TTDRIHFSNS GGLTESSNWE KGEGNPNVHV LSVPDDTHVV GNPEVMLEGF  360
KNHKEKKLDQ PIFLDSWEQF NDEENDVKCG GSSKPMVKEV PAEEEANVSH IQIKSTENQR  420
SDEIAAPADA NESLQVKFSE SDTNSLIASS SAAINQTRHL DDLDGNGKDE KCDLSAVHSS  480
KGPAEENSVE NDDAGDYEKG IFENCNIIGD SGYHETENFK LAGDDNSKES TENFFAKDPV  540
SNLESASRLS ELEVDPVSSS HEVGDAGDYE KDKTERFDII GDDGDHEKAE KYVLTGDDYR  600
KVSTEKIVAE NSITSLESAS SLSELQANLA TNLNDDDPGD HDGGEIEKSI ISGNESSEGP  660
VEKNLLVKPT LNLDSAIDLV ESKTVAEDAV DGSMLKLVDT RHKPLNSSSN SSGVGLNIVS  720
DHGPNAESSQ KSSEGCGMKE LGLSALDAES SVPSFTAEDN GSREFHGVSS GLSSQSFQEE  780
SDKNFVKQQL SSSALDVVDS NSQTDSLEGN WGSVSGTVLS IQSDAQAVPP ADSQTSVEEK  840
KSKAASERQY PEKSDMFEAP SFMTLVEPRG VNDQKATAAE IHTAHNPEQP KPAPLQAGWF  900
PSISHVVNES PGRKKNEEII AKVTNWSTGK QHTALKNLLG EAYLENKAKS PTQKESQTPA  960
PQRDDKAVKV KDGGPGATTV NSILGPESPT GQASKKENAK EWNSPARYPS DIKSEKKKVK  1020
GRPYWAQFVC CSSVH

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_016647854.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB218717	0.0	AB218717.1 Prunus mume Pm8 mRNA for hypothetical salt-inducible protein, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008222781.1	0.0	PREDICTED: uncharacterized protein LOC103322633 isoform X1
Refseq	XP_016647854.1	0.0	PREDICTED: uncharacterized protein LOC103322633 isoform X1
TrEMBL	A0A251QYN0	0.0	A0A251QYN0_PRUPE; Uncharacterized protein
STRING	XP_008222781.1	0.0	(Prunus mume)