PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016647615.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family SBP
Protein Properties Length: 480aa    MW: 52577.1 Da    PI: 8.3963
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016647615.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.89.7e-41185261278
                     -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     CqvegC+ dls+ak+yhr+h++C+ hsk+p+v+v+g+e+rfCqqCsrfh lsefDe+krsCrrrL++hn+rrrk+q+
  XP_016647615.1 185 CQVEGCNIDLSSAKDYHRKHRICSNHSKSPKVVVEGVERRFCQQCSRFHGLSEFDEKKRSCRRRLSDHNARRRKPQT 261
                     **************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.108.2E-34178246IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.479182259IPR004333Transcription factor, SBP-box
SuperFamilySSF1036128.11E-39183264IPR004333Transcription factor, SBP-box
PfamPF031104.4E-32185258IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MNSVLLMEWN EKPPSLWDLE NLFMFGAKVT DNSKKLQPAD WGIEGERGMN SESFYSTGGD  60
GGSGVSGSDL GDGSSKSSKS ASVSSSVGES KKPNFNLDAF EGFPNDFIHK NESAKAEALG  120
SSPTHEVSAG SGEPLLSLKL GKRMYFEDVC AGNNPKSSSL SVISSSMAKT KRSKSTGQSA  180
FPPHCQVEGC NIDLSSAKDY HRKHRICSNH SKSPKVVVEG VERRFCQQCS RFHGLSEFDE  240
KKRSCRRRLS DHNARRRKPQ TEALRNPTGL SSSLFSKDER QQMSLVLDQA PSVYTRHPSN  300
LTWDGACSFK FGQTKEYFPK PAKGGGTGGQ LNLANNGIPS SITMLYHDSS RLSPSKGTAA  360
EVLNRGAEES MISFNLGATQ DFHRALSLLS TSSWVSGEAK PVALDNNTNQ NYQNMPQPGT  420
QAMTQGLPVS SEYWQTQHLS LNTQEAHVSH SHSNGSNHFH QDLHQFKGPY EFGYQPNQFN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-261852581184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1240257KKRSCRRRLSDHNARRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_016647615.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016647615.10.0PREDICTED: squamosa promoter-binding-like protein 2
TrEMBLM5XD160.0M5XD16_PRUPE; Uncharacterized protein
STRINGXP_008222177.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46303058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.32e-77squamosa promoter binding protein-like 2