PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016646989.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | E2F/DP | ||||||||
Protein Properties | Length: 184aa MW: 20587.9 Da PI: 5.1884 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 30.5 | 5.9e-10 | 115 | 162 | 1 | 46 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvse..dvknkrRRi 46 r ++sL+llt+kf++l++++e+gi++ln++a++L ++ + ++ RR+ XP_016646989.1 115 RFDSSLGLLTKKFINLIKHAEDGILDLNNAADTLEAQveNLSDEERRL 162 6789******************************44377666677875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF48452 | 2.39E-5 | 4 | 39 | IPR011990 | Tetratricopeptide-like helical domain |
Gene3D | G3DSA:1.10.10.10 | 1.7E-8 | 113 | 161 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 0.0074 | 115 | 170 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 1.0E-6 | 117 | 162 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF144074 | 1.62E-6 | 146 | 184 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MPELLWKAYI DFELSEGEFE RARELYERLL DRTKHLKLKR KSDAADYEAE SSDRTAATGY 60 TEAVTSPLQT PVSSKVGRAN KTSRLTKCSR SGPQTPASNV GSPSGANLTP AGPCRFDSSL 120 GLLTKKFINL IKHAEDGILD LNNAADTLEA QVENLSDEER RLDQQIREMQ ERLRDLSEDE 180 SNKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA cooperatively with DP proteins through the E2 recognition site, 5'-TTTC[CG]CGC-3' found in the promoter region of a number of genes whose products are involved in cell cycle regulation or in DNA replication. The binding of retinoblastoma-related proteins represses transactivation. Involved in the control of cell-cycle progression from G1 to S phase and from G2 to M phase. Stimulates cell proliferation and delays differentiation. Represses cell enlargement and endoreduplication in auxin-free conditions. {ECO:0000269|PubMed:11669580, ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11862494, ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:12913157, ECO:0000269|PubMed:16055635, ECO:0000269|PubMed:16514015}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_016646989.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by light and by auxin. May be up-regulated by E2FA. {ECO:0000269|PubMed:16055635, ECO:0000269|PubMed:16514015, ECO:0000269|PubMed:18424613}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016646989.1 | 1e-133 | PREDICTED: transcription factor E2FB-like | ||||
Swissprot | Q9FV71 | 2e-36 | E2FB_ARATH; Transcription factor E2FB | ||||
TrEMBL | A0A314Z8V3 | 6e-86 | A0A314Z8V3_PRUYE; Transcription factor E2FB isoform X2 | ||||
TrEMBL | M5WJS3 | 5e-86 | M5WJS3_PRUPE; Uncharacterized protein (Fragment) | ||||
STRING | XP_008245828.1 | 7e-89 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22220.3 | 5e-39 | E2F transcription factor 1 |
Publications ? help Back to Top | |||
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