PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016646849.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 263aa    MW: 29523.9 Da    PI: 7.9105
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016646849.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF76.81.6e-241962851
                    HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     rqvtfskRr gi+KKAeELSvLC+ evav+ifs tgkl++yss
  XP_016646849.1 19 ARQVTFSKRRRGIFKKAEELSVLCESEVAVVIFSATGKLFDYSS 62
                    69****************************************96 PP
2K-box51.54.4e-1879173798
           K-box   7 ksleeakaeslqqelakLkkeienLq...reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                     ++++++ + +lq e+++  + +++L    r++R++ GedLe+L++ eLq+Leq ++ sl ++ ++K+el++++i  l +k  el e+n++Lr+++
  XP_016646849.1  79 VEKSDEPSVELQLEIENQIRLNKELAeksRQLRQMRGEDLEELNIDELQKLEQLVDASLGRVIETKEELIMSEIMALERKGAELVEANNQLRQRM 173
                     44666667778888887777777776666999************************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-31463IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.296464IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-22626IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.58E-27677IPR002100Transcription factor, MADS-box
PfamPF003191.9E-211960IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-222641IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-224162IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.28289179IPR002487Transcription factor, K-box
PfamPF014862.1E-1496173IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MVKTMRKKIK IKKIDYLPAR QVTFSKRRRG IFKKAEELSV LCESEVAVVI FSATGKLFDY  60
SSSSTKNVVE RYKAHTNGVE KSDEPSVELQ LEIENQIRLN KELAEKSRQL RQMRGEDLEE  120
LNIDELQKLE QLVDASLGRV IETKEELIMS EIMALERKGA ELVEANNQLR QRMVMLSRGN  180
IGPGLTEPER FINNIGDGGE EGMSSESATN ATISSCSSGL SLSLEDDCSD VTLALKLGKL  240
QLRNPNTVLL KTYGRKCIPR SLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3mu6_A7e-16675271Myocyte-specific enhancer factor 2A
3mu6_B7e-16675271Myocyte-specific enhancer factor 2A
3mu6_C7e-16675271Myocyte-specific enhancer factor 2A
3mu6_D7e-16675271Myocyte-specific enhancer factor 2A
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_016646849.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB5763510.0AB576351.1 Prunus mume PmDAM2 mRNA for dormancy associated MADS-box 2, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016646849.10.0PREDICTED: MADS-box protein JOINTLESS-like isoform X1
SwissprotQ9FUY63e-67JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLG1UE201e-168G1UE20_PRUMU; Dormancy associated MADS-box 2
STRINGXP_008219270.11e-169(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15110414
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24540.12e-59AGAMOUS-like 24
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]