PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008246525.2

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

GRAS

Protein Properties

Length: 473aa MW: 53691.8 Da PI: 6.7019

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008246525.2	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	389.6	3.5e-119	77	472	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn......sseelaal........ 81 +++lL++cAe +s+ d++ a++l++ ls +sp gd+++Rl++ f++AL+ rl++ ++ ++al++ +t+ + l XP_008246525.2 77 MRQLLITCAELISQLDFSSARRLISLLSSKSSPFGDSTERLTHQFVKALSLRLNNPNPSSSAALTTAATAAASsssnylL------Leeeddnne 165 589**************************************************9999988887777765553333440......245555555 PP GRAS 82 .......klfsevsPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRp........egppslRiTgvgspesgskeelee 160 ++++++P+++fshltaNqaIlea++++ + +Hi+Dfdi++G+QWp+L+qaLa+R+ ++pp+lRiT+ g+ s l + XP_008246525.2 166 ealhscyLTLNQITPFIRFSHLTANQAILEAIDSShHSIHILDFDIMHGVQWPPLMQALAERSynsdrtvqHPPPMLRITATGH----SLALLLK 256 555544345********************99899*********************766666655699*****....99* PP GRAS 161 tgerLakfAeelgvpfefnvl....vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse 251 tg+rL kfA++lg+ f+f++l +++ + +++++L + p+Eala+n+vl lh+l+ ++ + +L+ +ksl+Pkv++++++ea+hn++ XP_008246525.2 257 TGDRLLKFANSLGLAFHFHPLvlndAVRPSDIISPSTLGLLPNEALAINCVLYLHTLVTDDSGE---LSLFLRKIKSLNPKVLTIANKEANHNHP 348 *****************666666678999********************9555444...459********************* PP GRAS 252 sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlek.WrerleeaGFkpvplsekaakqaklllrkvk 345 F++rf+eale+y a+fdslea+lp++s+er+ vE +++grei++vv +e+ +rr+rhe++e+ W+ +l++aGF++v+ls +a +qaklllr ++ XP_008246525.2 349 LFFNRFVEALEHYGAIFDSLEATLPPNSRERQAVEDVWMGREIRDVVGAEEGRRRQRHEKYETyWEVMLRRAGFENVALSPFALSQAKLLLRLHY 443 ********************************************************9866*************************** PP GRAS 346 .sdgyrveeesgslvlgWkdrpLvsvSaW 373 s+gy++ ++s++lgW++rpL+svS+W XP_008246525.2 444 pSEGYQLRIINDSFFLGWQNRPLFSVSSW 472 *************************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	56.715	51	452	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.2E-116	77	472	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010014	Biological Process	meristem initiation
GO:0010223	Biological Process	secondary shoot formation
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 473 aa Download sequence Send to blast
MLMGSFNSSH LQQQEEQVPL EDQQEDHPHH NYQLPNISNI SDLQLYHHNH HHLHAHQISH 60 QPFVMPRGLM TTSPTHMRQL LITCAELISQ LDFSSARRLI SLLSSKSSPF GDSTERLTHQ 120 FVKALSLRLN NPNPSSSAAL TTAATAAASS SSNYLLLEEE DDNNEEALHS CYLTLNQITP 180 FIRFSHLTAN QAILEAIDSS HHSIHILDFD IMHGVQWPPL MQALAERSYN SDRTVQHPPP 240 MLRITATGHS LALLLKTGDR LLKFANSLGL AFHFHPLVLN DAVRPSDIIS PSTLGLLPNE 300 ALAINCVLYL HTLVTDDSGE LSLFLRKIKS LNPKVLTIAN KEANHNHPLF FNRFVEALEH 360 YGAIFDSLEA TLPPNSRERQ AVEDVWMGRE IRDVVGAEEG RRRQRHEKYE TYWEVMLRRA 420 GFENVALSPF ALSQAKLLLR LHYPSEGYQL RIINDSFFLG WQNRPLFSVS SWH

Sequence ? help Back to Top

Protein Sequence Length: 473 aa Download sequence Send to blast

MLMGSFNSSH LQQQEEQVPL EDQQEDHPHH NYQLPNISNI SDLQLYHHNH HHLHAHQISH  60
QPFVMPRGLM TTSPTHMRQL LITCAELISQ LDFSSARRLI SLLSSKSSPF GDSTERLTHQ  120
FVKALSLRLN NPNPSSSAAL TTAATAAASS SSNYLLLEEE DDNNEEALHS CYLTLNQITP  180
FIRFSHLTAN QAILEAIDSS HHSIHILDFD IMHGVQWPPL MQALAERSYN SDRTVQHPPP  240
MLRITATGHS LALLLKTGDR LLKFANSLGL AFHFHPLVLN DAVRPSDIIS PSTLGLLPNE  300
ALAINCVLYL HTLVTDDSGE LSLFLRKIKS LNPKVLTIAN KEANHNHPLF FNRFVEALEH  360
YGAIFDSLEA TLPPNSRERQ AVEDVWMGRE IRDVVGAEEG RRRQRHEKYE TYWEVMLRRA  420
GFENVALSPF ALSQAKLLLR LHYPSEGYQL RIINDSFFLG WQNRPLFSVS SWH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	6e-60	79	473	6	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269\|PubMed:12730136}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008246525.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008246525.2	0.0	PREDICTED: scarecrow-like protein 18
Swissprot	Q9ZWC5	1e-130	SCL18_ARATH; Scarecrow-like protein 18
TrEMBL	A0A251NJT0	0.0	A0A251NJT0_PRUPE; Uncharacterized protein
STRING	XP_008246525.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF12926	21	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55580.1	1e-120	GRAS family protein

Publications ? help Back to Top
Zhang B, et al. Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat. Sci Rep, 2015. 5: p. 12211 [PMID:26197925]