PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008246511.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 344aa    MW: 38719.3 Da    PI: 5.4636
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008246511.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.16.5e-13146197155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h ++Er+RR+++N+ ++ Lr+l+P +   + ++ + a+i   A++++k+L+
  XP_008246511.1 146 QRMTHIAVERNRRKQMNEYLSVLRSLMPDS---YVQRGDQASIIGGAINFVKELE 197
                     79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.73E-14144201No hitNo description
Gene3DG3DSA:4.10.280.105.1E-14144201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.326145196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-16145213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-10146197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-9151202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MALDAVVFPQ DPFSCATNKD LYSYWSSFDD DHHNFGFDND QDHHDQLQHQ ASLDFLGHQT  60
DHNPPNYGTN YYSSAPLNSM VPHFNELQLS NPNPDVSDTT SPTDDQPEFH QLPLDHTITM  120
ADSMPSTRAK RRRAKSRKNK EEIENQRMTH IAVERNRRKQ MNEYLSVLRS LMPDSYVQRG  180
DQASIIGGAI NFVKELEQEV HFLGTQKPNN GVPFSQFFTF PQYSTRSSGD HDSAAAAAMA  240
ELPLMECKLS NIAADIEVTM VESHASLKVR AKRIPKQLLK IVSGLHGMHL TILHLNVVTA  300
DDVVLYSLSL KVEDECTLAS VDEIATAVHQ MLATIQEEAM LNLN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146157RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008246511.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0061271e-36AP006127.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjT48O21, TM0211, complete sequence.
GenBankFJ3797691e-36FJ379769.1 Lotus japonicus putative basic helix-loop-helix protein BHLH26 gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008246511.10.0PREDICTED: transcription factor bHLH96-like
TrEMBLA0A251NZ270.0A0A251NZ27_PRUPE; Uncharacterized protein
STRINGXP_008246511.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-68bHLH family protein