PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008246395.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | MYB_related | ||||||||
Protein Properties | Length: 1119aa MW: 124870 Da PI: 9.9517 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.3 | 3.7e-08 | 44 | 80 | 3 | 41 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41 W++ E e+++da +++G++ W+++a+ + +R+ +++ XP_008246395.1 44 EWSKGELERFYDAYRKYGKD-WRKVASAVR-NRSIEMVE 80 7*****************99.*********.***98875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.79E-9 | 40 | 88 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.4E-4 | 41 | 89 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.3E-7 | 44 | 84 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.6E-4 | 44 | 79 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.21E-4 | 44 | 79 | No hit | No description |
SMART | SM01135 | 1.8E-59 | 645 | 746 | IPR033471 | DIRP domain |
Pfam | PF06584 | 4.2E-33 | 645 | 745 | IPR033471 | DIRP domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1119 aa Download sequence Send to blast |
MAPTKKSKSV KRYATVNEAS PEKYGGGSNK KKQRRKLSDK MGPEWSKGEL ERFYDAYRKY 60 GKDWRKVASA VRNRSIEMVE ALYNMNRAYL SLPEGTASVV GLKAMMTDHY NVMEGSDSER 120 ESNDALGFSR KPQKRKLGKD QLSASKDVFQ SHSNASHEGC LSLLKRRRLD GGQPRAVGKR 180 TPRFPVAYAY TKGDWDTYVS PIKKGRRSEG DNDDEVAHVA ALLTEASQRG GSPQISQTPY 240 RRPVHVKSSS VQSSERMHPP RGKARANLRD PSMDEDWLEG SIGSKGAETG DHARDSLEGV 300 GTVEINWKGK KFYGKKEKAK DIGNHQFDDG GEACSGTEEG LNVSSRGKDD IEVSNTKGER 360 FSPQGQRKRS KKLYFGDESS CLDALQTLAD LSLMMPESTM ESGSSVQLKE EGTNLDVEDK 420 FSVPEATSTS QSRNKNKIPS AKHRVPFAIS GVEGTNSKKS KLGREPAFDT TAVSELEQQL 480 QSTTKTWKRK RKSSVSKISN ADAPIDSNIN EPLKIEAFGE EENKPVTKGK RTNQSSTPSK 540 QWKSTRSLEG SLNSDYRRTG TDLTVTTAQA PTSNHVNLPT KRISRRKMYI PRTLHPKEKS 600 SEKKLKNQLN IRSSSAQDRA LYLKEKTSCC LSSHLVRRWC TFEWFYSALD YPWFAKREFE 660 EYLNHVGLGH IPRLTRVEWG VIRSSLGKPR RFSEHFLHEE REKLKQYRES VRKHYAELRT 720 GDREGLPTDL ARPLSVGQRV IALHPKTREV HDGSVLTVDH DKCRVQFDRP DIGVEFVMDV 780 DCMPLNPLDN MPEALRRQNF AFDKFSLTSK EANKNGNLNF GGPHFEKATS PMNTSVKQGK 840 GDSNHTTSQP KVASADIDRA QAQQSTYSQP GMVVAHNQAR DADIRALSEL TRALDKKVSS 900 ALLNLRQRNT YPANSLPPWL KQPANSTVYG GLPSSFDSSI SQESGSSVAE IVEVSRSKAH 960 MMVNAAIQAM SSRKGGEDAY VRIREALDSI DSQHLPSDSR LSLNRSQEQV NGNLGHRNQL 1020 ISSTSDPNFT SDSPGPKPNT DNEKTEAQVL SDVISACVMA VHMIQTCTER QYPPAVVAQV 1080 LDYAVTSLHP RCPQNVGIYR EIQMCMGRIK TQILALVPT |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 129 | 136 | RKPQKRKL |
2 | 164 | 168 | KRRRL |
3 | 584 | 605 | RRKMYIPRTLHPKEKSSEKKLK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008246395.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008246395.1 | 0.0 | PREDICTED: protein ALWAYS EARLY 2 isoform X6 | ||||
TrEMBL | A0A251P0B8 | 0.0 | A0A251P0B8_PRUPE; Uncharacterized protein | ||||
STRING | XP_008246389.1 | 0.0 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21430.2 | 0.0 | DNA binding |