PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008246393.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

MYB_related

Protein Properties

Length: 1156aa MW: 129105 Da PI: 9.8567

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008246393.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.2	3.8e-08	44	80	3	41
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41 W++ E e+++da +++G++ W+++a+ + +R+ +++ XP_008246393.1 44 EWSKGELERFYDAYRKYGKD-WRKVASAVR-NRSIEMVE 80 7***************99.*****.*98875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.87E-9	40	88	IPR009057	Homeodomain-like
SMART	SM00717	3.4E-4	41	89	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.8E-4	44	79	IPR009057	Homeodomain-like
Pfam	PF00249	7.6E-7	44	84	IPR001005	SANT/Myb domain
CDD	cd00167	1.33E-4	44	79	No hit	No description
Pfam	PF06584	4.4E-33	645	745	IPR033471	DIRP domain
SMART	SM01135	1.8E-59	645	746	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1156 aa Download sequence Send to blast
MAPTKKSKSV KRYATVNEAS PEKYGGGSNK KKQRRKLSDK MGPEWSKGEL ERFYDAYRKY 60 GKDWRKVASA VRNRSIEMVE ALYNMNRAYL SLPEGTASVV GLKAMMTDHY NVMEGSDSER 120 ESNDALGFSR KPQKRKLGKD QLSASKDVFQ SHSNASHEGC LSLLKRRRLD GGQPRAVGKR 180 TPRFPVAYAY TKGDWDTYVS PIKKGRRSEG DNDDEVAHVA ALLTEASQRG GSPQISQTPY 240 RRPVHVKSSS VQSSERMHPP RGKARANLRD PSMDEDWLEG SIGSKGAETG DHARDSLEGV 300 GTVEINWKGK KFYGKKEKAK DIGNHQFDDG GEACSGTEEG LNVSSRGKDD IEVSNTKGER 360 FSPQGQRKRS KKLYFGDESS CLDALQTLAD LSLMMPESTM ESGSSVQLKE EGTNLDVEDK 420 FSVPEATSTS QSRNKNKIPS AKHRVPFAIS GVEGTNSKKS KLGREPAFDT TAVSELEQQL 480 QSTTKTWKRK RKSSVSKISN ADAPIDSNIN EPLKIEAFGE EENKPVTKGK RTNQSSTPSK 540 QWKSTRSLEG SLNSDYRRTG TDLTVTTAQA PTSNHVNLPT KRISRRKMYI PRTLHPKEKS 600 SEKKLKNQLN IRSSSAQDRA LYLKEKTSCC LSSHLVRRWC TFEWFYSALD YPWFAKREFE 660 EYLNHVGLGH IPRLTRVEWG VIRSSLGKPR RFSEHFLHEE REKLKQYRES VRKHYAELRT 720 GDREGLPTDL ARPLSVGQRV IALHPKTREV HDGSVLTVDH DKCRVQFDRP DIGVEFVMDV 780 DCMPLNPLDN MPEALRRQNF AFDKFSLTSK EANKNGNLNF GGPHFEKATS PMNTSVKQGK 840 GDSNHTTSQP KVASADIDRA QAQQSTYSQP GMVVAHNQAR DADIRALSEL TRALDKKEAL 900 LMELRNTNNN ILENQNSGEC SLKDSEPFKK HYATVSSALL NLRQRNTYPA NSLPPWLKQP 960 ANSTVYGGLP SSFDSSISQE SGSSVAEIVE VSRSKAHMMV NAAIQAMSSR KGGEDAYVRI 1020 REALDSIDSQ HLPSDSRLSL NRSQEQVNGN LGHRNQLISS TSDPNFTSDS PGPKPNTDNE 1080 KTEAQVLSDV ISACVMAVHM IQTCTERQYP PAVVAQVLDY AVTSLHPRCP QNVGIYREIQ 1140 MCMGRIKTQI LALVPT

Sequence ? help Back to Top

Protein Sequence Length: 1156 aa Download sequence Send to blast

MAPTKKSKSV KRYATVNEAS PEKYGGGSNK KKQRRKLSDK MGPEWSKGEL ERFYDAYRKY  60
GKDWRKVASA VRNRSIEMVE ALYNMNRAYL SLPEGTASVV GLKAMMTDHY NVMEGSDSER  120
ESNDALGFSR KPQKRKLGKD QLSASKDVFQ SHSNASHEGC LSLLKRRRLD GGQPRAVGKR  180
TPRFPVAYAY TKGDWDTYVS PIKKGRRSEG DNDDEVAHVA ALLTEASQRG GSPQISQTPY  240
RRPVHVKSSS VQSSERMHPP RGKARANLRD PSMDEDWLEG SIGSKGAETG DHARDSLEGV  300
GTVEINWKGK KFYGKKEKAK DIGNHQFDDG GEACSGTEEG LNVSSRGKDD IEVSNTKGER  360
FSPQGQRKRS KKLYFGDESS CLDALQTLAD LSLMMPESTM ESGSSVQLKE EGTNLDVEDK  420
FSVPEATSTS QSRNKNKIPS AKHRVPFAIS GVEGTNSKKS KLGREPAFDT TAVSELEQQL  480
QSTTKTWKRK RKSSVSKISN ADAPIDSNIN EPLKIEAFGE EENKPVTKGK RTNQSSTPSK  540
QWKSTRSLEG SLNSDYRRTG TDLTVTTAQA PTSNHVNLPT KRISRRKMYI PRTLHPKEKS  600
SEKKLKNQLN IRSSSAQDRA LYLKEKTSCC LSSHLVRRWC TFEWFYSALD YPWFAKREFE  660
EYLNHVGLGH IPRLTRVEWG VIRSSLGKPR RFSEHFLHEE REKLKQYRES VRKHYAELRT  720
GDREGLPTDL ARPLSVGQRV IALHPKTREV HDGSVLTVDH DKCRVQFDRP DIGVEFVMDV  780
DCMPLNPLDN MPEALRRQNF AFDKFSLTSK EANKNGNLNF GGPHFEKATS PMNTSVKQGK  840
GDSNHTTSQP KVASADIDRA QAQQSTYSQP GMVVAHNQAR DADIRALSEL TRALDKKEAL  900
LMELRNTNNN ILENQNSGEC SLKDSEPFKK HYATVSSALL NLRQRNTYPA NSLPPWLKQP  960
ANSTVYGGLP SSFDSSISQE SGSSVAEIVE VSRSKAHMMV NAAIQAMSSR KGGEDAYVRI  1020
REALDSIDSQ HLPSDSRLSL NRSQEQVNGN LGHRNQLISS TSDPNFTSDS PGPKPNTDNE  1080
KTEAQVLSDV ISACVMAVHM IQTCTERQYP PAVVAQVLDY AVTSLHPRCP QNVGIYREIQ  1140
MCMGRIKTQI LALVPT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	129	136	RKPQKRKL
2	164	168	KRRRL
3	584	605	RRKMYIPRTLHPKEKSSEKKLK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008246393.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008246393.1	0.0	PREDICTED: protein ALWAYS EARLY 2 isoform X4
TrEMBL	A0A251NYV4	0.0	A0A251NYV4_PRUPE; Uncharacterized protein
STRING	XP_008246389.1	0.0	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding