PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008246389.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | MYB_related | ||||||||
Protein Properties | Length: 1168aa MW: 130386 Da PI: 9.8775 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.2 | 3.8e-08 | 45 | 81 | 3 | 41 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41 W++ E e+++da +++G++ W+++a+ + +R+ +++ XP_008246389.1 45 EWSKGELERFYDAYRKYGKD-WRKVASAVR-NRSIEMVE 81 7*****************99.*********.***98875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.64E-9 | 41 | 89 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.4E-4 | 42 | 90 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.35E-4 | 45 | 80 | No hit | No description |
Pfam | PF00249 | 7.7E-7 | 45 | 85 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.9E-4 | 45 | 80 | IPR009057 | Homeodomain-like |
SMART | SM01135 | 1.8E-59 | 646 | 747 | IPR033471 | DIRP domain |
Pfam | PF06584 | 4.4E-33 | 646 | 746 | IPR033471 | DIRP domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1168 aa Download sequence Send to blast |
MAPTKKSKSV KRYATVNEAS PEKYGGGSNK KKQRKRKLSD KMGPEWSKGE LERFYDAYRK 60 YGKDWRKVAS AVRNRSIEMV EALYNMNRAY LSLPEGTASV VGLKAMMTDH YNVMEGSDSE 120 RESNDALGFS RKPQKRKLGK DQLSASKDVF QSHSNASHEG CLSLLKRRRL DGGQPRAVGK 180 RTPRFPVAYA YTKGDWDTYV SPIKKGRRSE GDNDDEVAHV AALLTEASQR GGSPQISQTP 240 YRRPVHVKSS SVQSSERMHP PRGKARANLR DPSMDEDWLE GSIGSKGAET GDHARDSLEG 300 VGTVEINWKG KKFYGKKEKA KDIGNHQFDD GGEACSGTEE GLNVSSRGKD DIEVSNTKGE 360 RFSPQGQRKR SKKLYFGDES SCLDALQTLA DLSLMMPEST MESGSSVQLK EEGTNLDVED 420 KFSVPEATST SQSRNKNKIP SAKHRVPFAI SGVEGTNSKK SKLGREPAFD TTAVSELEQQ 480 LQSTTKTWKR KRKSSVSKIS NADAPIDSNI NEPLKIEAFG EEENKPVTKG KRTNQSSTPS 540 KQWKSTRSLE GSLNSDYRRT GTDLTVTTAQ APTSNHVNLP TKRISRRKMY IPRTLHPKEK 600 SSEKKLKNQL NIRSSSAQDR ALYLKEKTSC CLSSHLVRRW CTFEWFYSAL DYPWFAKREF 660 EEYLNHVGLG HIPRLTRVEW GVIRSSLGKP RRFSEHFLHE EREKLKQYRE SVRKHYAELR 720 TGDREGLPTD LARPLSVGQR VIALHPKTRE VHDGSVLTVD HDKCRVQFDR PDIGVEFVMD 780 VDCMPLNPLD NMPEALRRQN FAFDKFSLTS KEANKNGNLN FGGPHFEKAT SPMNTSVKQG 840 KGDSNHTTSQ PKVASADIDR AQAQQSTYSQ PGMVVAHNQA RDADIRALSE LTRALDKKEA 900 LLMELRNTNN NILENQNSGE CSLKDSEPFK KHYATVLVQL KEASGQVSSA LLNLRQRNTY 960 PANSLPPWLK QPANSTVYGG LPSSFDSSIS QESGSSVAEI VEVSRSKAHM MVNAAIQAMS 1020 SRKGGEDAYV RIREALDSID SQHLPSDSRL SLNRSQEQVN GNLGHRNQLI SSTSDPNFTS 1080 DSPGPKPNTD NEKTEAQVLS DVISACVMAV HMIQTCTERQ YPPAVVAQVL DYAVTSLHPR 1140 CPQNVGIYRE IQMCMGRIKT QILALVPT |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 130 | 137 | RKPQKRKL |
2 | 165 | 169 | KRRRL |
3 | 585 | 606 | RRKMYIPRTLHPKEKSSEKKLK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008246389.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008246389.1 | 0.0 | PREDICTED: protein ALWAYS EARLY 2 isoform X1 | ||||
TrEMBL | A0A251P294 | 0.0 | A0A251P294_PRUPE; Uncharacterized protein | ||||
STRING | XP_008246389.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1783 | 33 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21430.2 | 0.0 | DNA binding |