PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008246287.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | C3H | ||||||||
Protein Properties | Length: 150aa MW: 16894 Da PI: 7.4035 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.2 | 2e-11 | 58 | 79 | 6 | 27 |
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C++f +tG+C+yGd+C++ H++ XP_008246287.1 58 CNRFVKTGFCPYGDSCRYLHPK 79 ********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00451 | 2.1E-4 | 3 | 38 | IPR003604 | Zinc finger, U1-type |
SuperFamily | SSF57667 | 6.65E-17 | 4 | 61 | No hit | No description |
Pfam | PF06220 | 4.7E-11 | 5 | 39 | IPR013085 | Zinc finger, U1-C type |
PROSITE profile | PS50103 | 14.971 | 52 | 80 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3E-6 | 53 | 79 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.06E-8 | 55 | 82 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.4E-8 | 57 | 79 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.9E-9 | 57 | 79 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 150 aa Download sequence Send to blast |
MPLGKYYCEY CDKEFQDTPS ARRRHLQGLQ HLRAKAQWYD SFKDPSHAYT ESLTKGVCNR 60 FVKTGFCPYG DSCRYLHPKN NQQNMVTQGA PGLIDNNQSS TFQENQLVGG SSLPDVVVRD 120 SMGMSWGNLP PSLMPPPEGG YPLLPFVDWG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008246287.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008246287.1 | 1e-111 | PREDICTED: zinc finger CCCH domain-containing protein 3 | ||||
Swissprot | Q0JP11 | 3e-41 | C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3 | ||||
TrEMBL | M5WL08 | 1e-107 | M5WL08_PRUPE; Uncharacterized protein | ||||
STRING | XP_008246287.1 | 1e-110 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11959 | 28 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26749.1 | 5e-42 | C3H family protein |
Publications ? help Back to Top | |||
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