PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008245986.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | GRAS | ||||||||
Protein Properties | Length: 803aa MW: 90456.5 Da PI: 5.4008 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 363.7 | 2.6e-111 | 427 | 800 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l++lL+ cA+avss+d++ +++lL+++++++spdgd qRla++f++AL+ar+a++++++ ++ ++++++++++l+a+++ ++P+ ++s XP_008245986.1 427 LRNLLILCAQAVSSNDFRTTSELLKQVRQHSSPDGDGSQRLAHFFANALEARMAGTGTGTQMFYASLASKRTSVVDTLKAYQVHLSACPFKRISL 521 6899***************************************************999999888999999899********************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188 + N++Il+ +e+++++Hi+Df+i +G+QWp L+q L++Rp+gpp+lRiTg++ p++g ++ +eetg+rLak++e+++vpfe+n+++++++e+ XP_008245986.1 522 FFKNKMILKMAEKATTLHIVDFGILYGFQWPILIQHLSKRPGGPPKLRITGIEVPQPGfrPADWIEETGRRLAKYCERFNVPFEYNAIASQNWES 616 *********************************************************9*9****************************999**** PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 ++le+L+++++E+laVn++l+ ++llde+v+++ +rd+vLkl+++++P+++v++ + ++n++ F++rf eal ++sal+d+++ +++r++eer XP_008245986.1 617 IKLEDLKTERNEVLAVNCMLRFKNLLDETVEVNCPRDSVLKLIRRMKPDIFVHTIVNGSYNAPFFVTRFREALFHFSALYDAFDINIARDNEERL 711 *********************************************************************************************** PP GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 + E + gre++nv+aceg er+er et+++W+ r ++aG++p+pl+e++ k k ++ + + + ++++s+++++gWk+r +++ S+W XP_008245986.1 712 MFESF-YGREAMNVIACEGLERVERPETYKQWQLRCTRAGLRPLPLDEDMLKIFKDKVKAWYHKDFVIDQDSDWMLQGWKGRIVYASSCW 800 ****9.9*******************************************************888************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 63.744 | 401 | 781 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 8.9E-109 | 427 | 800 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 803 aa Download sequence Send to blast |
MDPTINGVPD YTNGFNIDAE PFLTNSTQFP NLINEYQFNQ LSPDLNFLDN HFSLPSPDLE 60 PGNFVPSISV SSDGESFVPS TSLSPDGVSF VPPMTTVSPG GDSSSDDNDF SETVFKFINQ 120 ILMEENIEKK PCMFYDPLGL RVTEKSFYDA LGQKYPSSPN QQPLYIDQNV ESPDGNFSGN 180 CSDCSGSNSN SSASPGTSNS VDPPWLGDPV DQKPFLSQTS LPNDHTFQFN SHPNSRLSVP 240 LTNDLTSVGD ELHVDNALQG SSVNEFLAQN IFTDSESILQ FNRGLEEASK FLPKDNQLVI 300 NLESKTTYPK VKRHAPTVIV KKEKSERKNS PNRSWGRKNH ERGDVAPEEE RSSKQSAVYI 360 QESELSEMFD RVLLCTEGNN ESPCDNVALQ NEASQALQSN GHPQESNGNG GKARAKKQGK 420 KKETVDLRNL LILCAQAVSS NDFRTTSELL KQVRQHSSPD GDGSQRLAHF FANALEARMA 480 GTGTGTQMFY ASLASKRTSV VDTLKAYQVH LSACPFKRIS LFFKNKMILK MAEKATTLHI 540 VDFGILYGFQ WPILIQHLSK RPGGPPKLRI TGIEVPQPGF RPADWIEETG RRLAKYCERF 600 NVPFEYNAIA SQNWESIKLE DLKTERNEVL AVNCMLRFKN LLDETVEVNC PRDSVLKLIR 660 RMKPDIFVHT IVNGSYNAPF FVTRFREALF HFSALYDAFD INIARDNEER LMFESFYGRE 720 AMNVIACEGL ERVERPETYK QWQLRCTRAG LRPLPLDEDM LKIFKDKVKA WYHKDFVIDQ 780 DSDWMLQGWK GRIVYASSCW VPA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 3e-43 | 410 | 802 | 1 | 379 | Protein SCARECROW |
5b3h_D | 3e-43 | 410 | 802 | 1 | 379 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008245986.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008245986.1 | 0.0 | PREDICTED: scarecrow-like protein 33 | ||||
Refseq | XP_016652695.1 | 0.0 | PREDICTED: scarecrow-like protein 33 | ||||
Swissprot | Q9XE58 | 0.0 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | A0A314Z079 | 0.0 | A0A314Z079_PRUYE; Scarecrow-like protein 33 | ||||
STRING | XP_008245986.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF131 | 34 | 339 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 0.0 | SCARECROW-like 14 |
Publications ? help Back to Top | |||
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