PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008245936.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 242aa MW: 26888.9 Da PI: 5.1784

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008245936.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.9	0.00042	192	228	13	54
HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 R+++++ Lr ++P + ++ +++L +Av+Y+ksL XP_008245936.1 192 RQKMKKMVRVLRGIVPGgN------EMNTVDVLDEAVQYLKSL 228 7889999999999999855......8***************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.582	179	228	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.8E-4	186	234	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.16E-6	189	233	No hit	No description
Gene3D	G3DSA:4.10.280.10	6.1E-7	190	239	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.88E-8	192	238	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
MQRDQQFDPN KAAPPFANQV GNNYMHIPVA SARGAVLPHE AKHIKPFHGV EFQTSDICPK 60 NFIIFDQTDH RSQIMFNPAI AHKITGPAFN ICAAYVQDNL GLNEGNNEDR ETSSSLKEDS 120 DDIDALLSLE EEELEEYDEE EVSTARTHGN YGSMSPDSCS NYGLKTKKNR QCSSLGKSSG 180 IGSSSCNSER KRQKMKKMVR VLRGIVPGGN EMNTVDVLDE AVQYLKSLKV ELQHLGVENL 240 ND

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008245936.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008245935.1	0.0	PREDICTED: transcription factor bHLH144-like
Refseq	XP_008245936.1	0.0	PREDICTED: transcription factor bHLH144-like
Refseq	XP_016652732.1	0.0	PREDICTED: transcription factor bHLH144-like
Swissprot	Q9ASX9	6e-46	BH144_ARATH; Transcription factor bHLH144
TrEMBL	M5WH37	1e-180	M5WH37_PRUPE; Uncharacterized protein
STRING	XP_008245935.1	0.0	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29950.2	3e-33	bHLH family protein

Publications ? help Back to Top
Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019] Cai Q, et al. The SAC51 Family Plays a Central Role in Thermospermine Responses in Arabidopsis. Plant Cell Physiol., 2016. 57(8): p. 1583-92 [PMID:27388339] Yamamoto M,Takahashi T Thermospermine enhances translation of SAC51 and SACL1 in Arabidopsis. Plant Signal Behav, 2017. 12(1): p. e1276685 [PMID:28045577]