PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008245853.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family NAC
Protein Properties Length: 826aa    MW: 92186.9 Da    PI: 4.6888
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008245853.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.81.7e-5291441128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     lp GfrF+Ptdeel+++yLk k++g++ e+ +vi+e+d++k+ePwdLpk   +k++++ew+fF++rd+ky++g+r+nrat++gyWkatgkd++++
  XP_008245853.1   9 LPLGFRFRPTDEELINHYLKLKINGRNSEV-QVIPEIDVCKWEPWDLPKlsVIKSDDQEWFFFCPRDRKYPNGHRSNRATDAGYWKATGKDRTIK 102
                     699************************999.99***************5458889999************************************* PP

             NAM  94 sk.......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     s+       ++ +vg+kktLvf++grap+ge+t+W+mheyr+
  XP_008245853.1 103 SRqcksasnSTGQVGMKKTLVFHRGRAPRGERTSWIMHEYRA 144
                     *988777665566***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.24E-604167IPR003441NAC domain
PROSITE profilePS5100556.659167IPR003441NAC domain
PfamPF023651.0E-2610143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 826 aa     Download sequence    Send to blast
MAVLSMDSLP LGFRFRPTDE ELINHYLKLK INGRNSEVQV IPEIDVCKWE PWDLPKLSVI  60
KSDDQEWFFF CPRDRKYPNG HRSNRATDAG YWKATGKDRT IKSRQCKSAS NSTGQVGMKK  120
TLVFHRGRAP RGERTSWIMH EYRATQKDLD GTAPGQGAFV LCRLFHKPEE KADVLKYDEV  180
EQTGLSPTTT KYSPDETSSD VVQETATPDM QGEKQSESIM RWWNDKSDNM SPDALPPVPG  240
DSYMASDVED PGAEETGIQG HLLKEENQVF DEPFGGQIDC KVFSPLQSLI NSELEHYVGS  300
PFTSDFGIYN NGFHFQDGTC EQDVAFPEFL DEFGINPYES SCEESTSQKN LVVGNETYLS  360
GQSCMLQTTP PGNSCLNGAW DNTDTNIAQH DQEGRASGLY SKQFDAEDLL QKTSLGYYQA  420
EAQASLDNQK PRMGNMADNY FPPSAFAEQF LVSSVNDTFN SSDGSTSWKN FDNHSGDHGG  480
GTAIKIRARH LQQLQNSGNF VDQGCAPRRL LLCVDKPSSG SIANGNMGDA NYRKEEDEVQ  540
SAITEARDDI RQSPSSDEQE EEHAIFNNGE EFSSRKDSVN HGYDQVGRTR IRIKTRQPQQ  600
QSNSENYVTQ GTAPRRIRLQ MNISTGSVVD SNVRDRDDVE EDEVQSTNTD AREAIQQSHT  660
SDEQEKEHAK INNKEELTSR KNSVNYGSDI VGITGIRIKA RQPQQPLKSD ESVTQGTAPR  720
RIRLQMNPVA DSNLREPTPG KEDEVQSTIN ETRESTQKIP DSDEHDAECH LSKLEVNGKM  780
AEDSPAEMVD KSRETAEEAA GKLKLRTGSD SSLHSNHTGL SVASKA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-44416712165NO APICAL MERISTEM PROTEIN
1ut4_B6e-44416712165NO APICAL MERISTEM PROTEIN
1ut7_A6e-44416712165NO APICAL MERISTEM PROTEIN
1ut7_B6e-44416712165NO APICAL MERISTEM PROTEIN
3swm_A6e-44416715168NAC domain-containing protein 19
3swm_B6e-44416715168NAC domain-containing protein 19
3swm_C6e-44416715168NAC domain-containing protein 19
3swm_D6e-44416715168NAC domain-containing protein 19
3swp_A6e-44416715168NAC domain-containing protein 19
3swp_B6e-44416715168NAC domain-containing protein 19
3swp_C6e-44416715168NAC domain-containing protein 19
3swp_D6e-44416715168NAC domain-containing protein 19
4dul_A6e-44416712165NAC domain-containing protein 19
4dul_B6e-44416712165NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008245853.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008245853.10.0PREDICTED: protein NTM1-like 9, partial
TrEMBLM5WXM80.0M5WXM8_PRUPE; Uncharacterized protein
STRINGXP_008245853.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF136251825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.11e-133NAC 014