PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008245828.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family E2F/DP
Protein Properties Length: 411aa    MW: 45661.6 Da    PI: 4.5979
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008245828.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP86.12.6e-2791156171
         E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                     r ++sL+llt+kf++l++++e+gi++ln++a++L   +v  ++RRiYDi+NVLe+++liekk kn+i+wkg
  XP_008245828.1  91 RFDSSLGLLTKKFINLIKHAEDGILDLNNAADTL---EV--QKRRIYDITNVLEGIGLIEKKLKNRIQWKG 156
                     6789******************************...99..****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.0E-2889158IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.7E-3491156IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467854.76E-1791154IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023191.3E-2493156IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF1440749.15E-34168273No hitNo description
CDDcd146601.64E-48171273No hitNo description
PfamPF164212.3E-33172271IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010090Biological Processtrichome morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051302Biological Processregulation of cell division
GO:0051446Biological Processpositive regulation of meiotic cell cycle
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MRNYNNHSLH SHYLKRKSDA ADYEAESSDR TAATGYTEAV TSPLQTPVSS KVGKANKTSR  60
LTKCSRSGPQ TPASNVGSPS GANLTPAGPC RFDSSLGLLT KKFINLIKHA EDGILDLNNA  120
ADTLEVQKRR IYDITNVLEG IGLIEKKLKN RIQWKGLDVS RTGDVDENYP SLQAQVENLS  180
DEERRLDQQI REMQERLRDL SEDESNKKWL FVTEEDIKGL PCLQNETLIA IKAPHGTTLE  240
VPDPDEAVDY PQRRYRMVLR STMGPIDVYL VSQFEEKFEE INGVEVPTDI PSSSGVNENP  300
ATTMVTENRG KDVEIQGPDD HRMCTDPTAS QDIMSGMMKI VPSDVDSDAD YWVLSDADIS  360
IXTWRTEPGV VWNELGAIDE NYPMVNVSTP QPQTPPSSST QVPATANRTK T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A9e-2786157274PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA cooperatively with DP proteins through the E2 recognition site, 5'-TTTC[CG]CGC-3' found in the promoter region of a number of genes whose products are involved in cell cycle regulation or in DNA replication. The binding of retinoblastoma-related proteins represses transactivation. Involved in the control of cell-cycle progression from G1 to S phase and from G2 to M phase. Stimulates cell proliferation and delays differentiation. Represses cell enlargement and endoreduplication in auxin-free conditions. {ECO:0000269|PubMed:11669580, ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11862494, ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:12913157, ECO:0000269|PubMed:16055635, ECO:0000269|PubMed:16514015}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008245828.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by light and by auxin. May be up-regulated by E2FA. {ECO:0000269|PubMed:16055635, ECO:0000269|PubMed:16514015, ECO:0000269|PubMed:18424613}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008245828.10.0PREDICTED: LOW QUALITY PROTEIN: transcription factor E2FB-like
SwissprotQ9FV711e-143E2FB_ARATH; Transcription factor E2FB
TrEMBLA0A251NQ530.0A0A251NQ53_PRUPE; Uncharacterized protein
TrEMBLA0A251NQ630.0A0A251NQ63_PRUPE; Uncharacterized protein
TrEMBLA0A314Z8V30.0A0A314Z8V3_PRUYE; Transcription factor E2FB isoform X2
TrEMBLM5WJS30.0M5WJS3_PRUPE; Uncharacterized protein (Fragment)
STRINGXP_008245828.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19473490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22220.21e-141E2F transcription factor 1
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Wu M,Liu L,Hijazi H,Chan C
    A multi-layer inference approach to reconstruct condition-specific genes and their regulation.
    Bioinformatics, 2013. 29(12): p. 1541-52
    [PMID:23610368]
  3. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]