PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008245761.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 367aa    MW: 40170 Da    PI: 6.7808
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008245761.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.35.6e-18205259256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ +++keq   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  XP_008245761.1 205 RKKLRLSKEQSAFLEESFKEHHTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 259
                     778899***********************************************98 PP
2HD-ZIP_I/II126.71e-40205294191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     +kk+rlskeq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +l
  XP_008245761.1 205 RKKLRLSKEQSAFLEESFKEHHTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLHKELQELR-AL 294
                     69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-18179262IPR009057Homeodomain-like
SuperFamilySSF466892.57E-18198262IPR009057Homeodomain-like
PROSITE profilePS5007117.054201261IPR001356Homeobox domain
SMARTSM003893.9E-16203265IPR001356Homeobox domain
PfamPF000462.0E-15205259IPR001356Homeobox domain
CDDcd000867.60E-17205262No hitNo description
PROSITE patternPS000270236259IPR017970Homeobox, conserved site
PfamPF021835.4E-11261295IPR003106Leucine zipper, homeobox-associated
SMARTSM003403.9E-22261307IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MELCLSLGDV QAPAEPFGLV SSSSSEKPRD DRVIMAASKT TGFCMSLSIG PSCDSSTSTS  60
PREADQQLDT NDHQNDDDRS RFSAACGSKS DVPVQLDLLP HTPVAPRSSS HGFPWPTPSD  120
QNGGGGGGGG SSENVNRVEE VAAVSSSPTN SGASSFQMDI GLYSSNYRGS GGKRSHSPEA  180
EGDEGERQSN SRASDEDDIN GINTRKKLRL SKEQSAFLEE SFKEHHTLNP KQKLALAKQL  240
NLRPRQVEVW FQNRRARTKL KQTEVDCEFL KRCCETLTEE NRRLHKELQE LRALKTHHHS  300
NPFYTQSPAT TLTMCPSCER IATTNTTNTT TTTNNNKTTT KAQAEADGFP RFYPFCQPQS  360
HHSSAAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1203209TRKKLRL
2253261RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008245761.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008245761.10.0PREDICTED: homeobox-leucine zipper protein HOX11-like isoform X3
SwissprotP466656e-83HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A251Q8T80.0A0A251Q8T8_PRUPE; Uncharacterized protein
STRINGXP_008245760.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.18e-65homeobox from Arabidopsis thaliana