PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008245760.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 368aa    MW: 40269.1 Da    PI: 6.7808
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008245760.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.25.6e-18206260256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ +++keq   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  XP_008245760.1 206 RKKLRLSKEQSAFLEESFKEHHTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 260
                     778899***********************************************98 PP
2HD-ZIP_I/II126.71e-40206295191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     +kk+rlskeq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +l
  XP_008245760.1 206 RKKLRLSKEQSAFLEESFKEHHTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLHKELQELR-AL 295
                     69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.3E-18180263IPR009057Homeodomain-like
SuperFamilySSF466892.61E-18199263IPR009057Homeodomain-like
PROSITE profilePS5007117.054202262IPR001356Homeobox domain
SMARTSM003893.9E-16204266IPR001356Homeobox domain
PfamPF000462.1E-15206260IPR001356Homeobox domain
CDDcd000866.88E-17206263No hitNo description
PROSITE patternPS000270237260IPR017970Homeobox, conserved site
SMARTSM003403.9E-22262308IPR003106Leucine zipper, homeobox-associated
PfamPF021835.5E-11262296IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MELCLSLGDV QAPAEPFGLV SSSSSEKPRD DRVIMAASKT TGFCMSLSIG PSCDSSTSTS  60
PREADQQLDT NDHQNDDDRS RFSAACGSKS DVPVQLDLLP HTPVAPRSSS HGFPWPTPSD  120
QNVGGGGGGG GSSENVNRVE EVAAVSSSPT NSGASSFQMD IGLYSSNYRG SGGKRSHSPE  180
AEGDEGERQS NSRASDEDDI NGINTRKKLR LSKEQSAFLE ESFKEHHTLN PKQKLALAKQ  240
LNLRPRQVEV WFQNRRARTK LKQTEVDCEF LKRCCETLTE ENRRLHKELQ ELRALKTHHH  300
SNPFYTQSPA TTLTMCPSCE RIATTNTTNT TTTTNNNKTT TKAQAEADGF PRFYPFCQPQ  360
SHHSSAAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204210TRKKLRL
2254262RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008245760.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008245760.10.0PREDICTED: homeobox-leucine zipper protein HOX11-like isoform X2
SwissprotP466652e-82HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A251Q8X30.0A0A251Q8X3_PRUPE; Uncharacterized protein
STRINGXP_008245760.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.19e-65homeobox from Arabidopsis thaliana