PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008245529.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family E2F/DP
Protein Properties Length: 1725aa    MW: 195655 Da    PI: 8.7077
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008245529.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP83.51.7e-2614861551171
         E2F_TDP    1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71  
                      r ++sL+llt+kf++l++++e+gi++ln++a++L   +v  ++RRiYDi+NVLe+++liekk kn+i+wkg
  XP_008245529.1 1486 RFDSSLGLLTKKFINLIKHAEDGILDLNNAADTL---EV--QKRRIYDITNVLEGIGLIEKKLKNRIQWKG 1551
                      6789******************************...99..****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.60.10.107.7E-141250IPR005135Endonuclease/exonuclease/phosphatase
SuperFamilySSF562191.25E-264250IPR005135Endonuclease/exonuclease/phosphatase
PfamPF033722.8E-75245IPR005135Endonuclease/exonuclease/phosphatase
SuperFamilySSF566722.15E-20468746No hitNo description
PROSITE profilePS5087816.604497779IPR000477Reverse transcriptase domain
CDDcd016501.96E-53510778No hitNo description
PfamPF000784.0E-43516777IPR000477Reverse transcriptase domain
PfamPF139664.3E-1810381134IPR026960Reverse transcriptase zinc-binding domain
SuperFamilySSF530981.12E-1212451376IPR012337Ribonuclease H-like domain
CDDcd062221.78E-2212481357No hitNo description
PfamPF134561.9E-2312491371No hitNo description
PROSITE profilePS508799.96312671373IPR002156Ribonuclease H domain
Gene3DG3DSA:1.10.10.106.8E-2814841553IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.26E-1614861549IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.7E-3414861551IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023198.5E-2414881551IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF1440741.57E-1115631616No hitNo description
PfamPF164212.3E-815671616IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004523Molecular FunctionRNA-DNA hybrid ribonuclease activity
Sequence ? help Back to Top
Protein Sequence    Length: 1725 aa     Download sequence    Send to blast
MSYLAWNCQG LGSDLTIRSL RETIKGKRPS IVFLMETKQK QNRLTRLARD VGFDHEGSSG  60
GYHLSRLARD VGFDHEVYAD PVGTSGGLCL WWDDRVQVEV TICSKYLIDS WVTEQGSGVR  120
FRASWVYGSP YRDEKEACWG WLDSVLGSVV FPWLCIGDFN DMLWDFEKRG GRRLDNNRRR  180
YLQEFLDKKE LVDLGYQGSS FTWRGTRADG VVVQERLDRG LINVPWQETW PNSHAIHLPA  240
VGSDHCPVLI LTEINVRRGL KPFKFEAFWA SDPECREVVD RSWGLCSPAA SCFSWDTKLG  300
TCRTELKQWS DGKFKNNRIM ATALLSDLDS LQRDWEENTV KIKEVERSLN QVWRCEELYW  360
KQRAKIQWLK HGDANTAFFH NCTIQKRRRN YLGRIRNLAG DWEMGEDHVR SIIEDYFKNL  420
FTSEGPRDWG DILAFVPVVI SDNINASLLA PISDEEIRIT VFQMGALKSP GPDGFSGIFY  480
QKYWSIVGND VCRLVKNFFS NTMSMETLNR TEIALIPKVP HPEWVTQFRP ISLCNYSYKI  540
ISKILANRLQ PFLDKIISPQ QCAFIPGRQI QDNVLVAHEA FHSLKIRKKT KIFEMGLKLD  600
MSKAYDRIEW DFVQAVLLKM GFARQWVRWV LRCLSSVEFA VIVNGKVGSY FKPTRGLRQG  660
DPLSPYLFLI VSDVLSSMIN QAVTHGFIQG MKFGRGGPVL SHLFFADDSL MFLKATENNC  720
RVIVRILDAY CTASGQLVNF EKSNMFFSPN TPLEVKDRLR AILNVTISED PGKYLGLPTI  780
WGRSKKMALA FVKDKILGKI QGWKHGLLSQ AGREVLIKSV AQAVPSYPMS VFLFPNGFCQ  840
EIDSILANFW WGQSQQSNKI HWISWKDLGM PKNEGGMGFR NLKDFNVALL AKQGWRMVTE  900
PQAFWAQLLK SKYFPNCDFL RAGKGAKSSW AWSSLLVGRN IIMNGARWQV LDGSRVHLWT  960
DKWIPGCTEH ALQPSHLSQV DLEAKVETII DCHSREWNLE AIGGMFSPNA AKIIKAMPLG  1020
DGWEKDRLIW PLNQTGSYTV KSGYNMIHMA HLDTSVRPSS SRILDKALWK LIWGSQMVPK  1080
LMNFWWRLVR GCLPTRDALF RRHLGTSPLC PICGEFPESV EHLFLLCNWV RPVWFGGPLN  1140
YRINRQSITS MSDWLMQILK FSQGLGYDRK WLISQIFYSC WSIWKSRCSA IFDDISVCPR  1200
NTLLVAKKLM NDFNLVGCPH GDAILEEDID DGHRVVRWSP PPTSVYKINI DASWVSCTLQ  1260
AGLGVVVRNS AGIFMGGCCG PRLASSAIEA EAHAALKGVK LAVERGFPNV VFESDSKELV  1320
QSVKGNILKG RWMIYPILSA IRRHCSSFIS CSWHWVPRGA NRAADAAAQR ARRRMCDEVW  1380
ASSPPSSLLW ENIENAEKRT QMVGLDDVLK RKSDAADYEA ESSDRTAATG YTEAVTSPLQ  1440
TPVSSKVGKA NKTSRLTKCS RSGPQTPASN VGSPSGANLT PAGPCRFDSS LGLLTKKFIN  1500
LIKHAEDGIL DLNNAADTLE VQKRRIYDIT NVLEGIGLIE KKLKNRIQWK GLDVSRTGDV  1560
DENYPSLQAQ VENLSDEERR LDQQIREMRE SLRDLSKDES NEKWLFVTEE DIKGLHSGTK  1620
IPKLILLHFL AVHRIFRHSD PTASQDIMSG MMKIVPSDVD SDADYWVLSD ADISIXTWRT  1680
EPGVVWNELG AIDEDYAMVN VSKPRPQTPP SSSTQVPATA NRPMT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A8e-2614811552274PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008245529.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008245529.10.0PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103343662
STRINGXP_008245529.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22220.32e-70E2F transcription factor 1