PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008245100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | G2-like | ||||||||
Protein Properties | Length: 254aa MW: 28006.4 Da PI: 7.3942 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 100.8 | 8.9e-32 | 113 | 166 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hv+SHLQ+YR+ XP_008245100.1 113 PRMRWTTSLHNRFVHAVELLGGHERATPKSVLELMDVKDLTLAHVRSHLQMYRT 166 9****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.84E-16 | 110 | 166 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.1E-28 | 111 | 166 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.0E-24 | 113 | 166 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.4E-8 | 114 | 165 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MRATSESAEW IFLATILGLE MLSAACDQAS SPRRPHYALS GMLLAIAAVL ISIWELIYKG 60 KNQRNANTTD NNILRKPSDS NSSTHTSTIT RTSSSSPLFQ AQGGLLRSRL RAPRMRWTTS 120 LHNRFVHAVE LLGGHERATP KSVLELMDVK DLTLAHVRSH LQMYRTVKTA DRAAAFSGQS 180 DVHENASSVD ATEDIIFYLQ NPRRSGDQLL SAQTIHVQDN KDSWENSSST GETSLHAIGA 240 NIQSLDDQEV VVPI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 6e-17 | 114 | 168 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 6e-17 | 114 | 168 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 6e-17 | 114 | 168 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 6e-17 | 114 | 168 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 6e-17 | 114 | 168 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 6e-17 | 114 | 168 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 6e-17 | 114 | 168 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 6e-17 | 114 | 168 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:17307928}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008245100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008245100.1 | 0.0 | PREDICTED: probable transcription factor KAN2 isoform X3 | ||||
Swissprot | Q9C616 | 1e-45 | KAN2_ARATH; Probable transcription factor KAN2 | ||||
TrEMBL | A0A251P4F8 | 2e-66 | A0A251P4F8_PRUPE; Uncharacterized protein | ||||
TrEMBL | M5WUE2 | 1e-66 | M5WUE2_PRUPE; Uncharacterized protein | ||||
STRING | XP_008245097.1 | 1e-123 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32240.1 | 2e-47 | G2-like family protein |
Publications ? help Back to Top | |||
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