PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008245097.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | G2-like | ||||||||
Protein Properties | Length: 334aa MW: 37015.2 Da PI: 8.7161 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 100.2 | 1.4e-31 | 193 | 246 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hv+SHLQ+YR+ XP_008245097.1 193 PRMRWTTSLHNRFVHAVELLGGHERATPKSVLELMDVKDLTLAHVRSHLQMYRT 246 9****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 7.7E-16 | 190 | 246 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.8E-28 | 191 | 246 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.2E-23 | 193 | 246 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.3E-8 | 194 | 245 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MRATSESAEW IFLATILGLE MLSAACDQAS SPRRPHYALS GMLLAIAAVL ISIWELIYKG 60 KREGVVLRRW GMLWWFYHPP PPRHTPFGTL TDIYGLVAGI SQCICSIIQY VYCLRHADNP 120 IKASILPAIF LICLGGSKLG KNQRNANTTD NNILRKPSDS NSSTHTSTIT RTSSSSPLFQ 180 AQGGLLRSRL RAPRMRWTTS LHNRFVHAVE LLGGHERATP KSVLELMDVK DLTLAHVRSH 240 LQMYRTVKTA DRAAAFSGQS DVHENASSVD ATEDIIFYLQ NPRRSGDQLL SAQTIHVQDN 300 KDSWENSSST GETSLHAIGA NIQSLDDQEV VVPI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 8e-17 | 194 | 248 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 8e-17 | 194 | 248 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 8e-17 | 194 | 248 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 8e-17 | 194 | 248 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 8e-17 | 194 | 248 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 8e-17 | 194 | 248 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 8e-17 | 194 | 248 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 8e-17 | 194 | 248 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 8e-17 | 194 | 248 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 8e-17 | 194 | 248 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 8e-17 | 194 | 248 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 8e-17 | 194 | 248 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:17307928}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008245097.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008245097.1 | 0.0 | PREDICTED: uncharacterized protein LOC103343207 isoform X1 | ||||
Swissprot | Q9C616 | 5e-44 | KAN2_ARATH; Probable transcription factor KAN2 | ||||
TrEMBL | A0A251P1Q2 | 3e-93 | A0A251P1Q2_PRUPE; Uncharacterized protein | ||||
TrEMBL | A0A251P1R8 | 6e-93 | A0A251P1R8_PRUPE; Uncharacterized protein | ||||
TrEMBL | A0A251P1X1 | 4e-93 | A0A251P1X1_PRUPE; Uncharacterized protein | ||||
STRING | XP_008245097.1 | 0.0 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32240.1 | 5e-46 | G2-like family protein |
Publications ? help Back to Top | |||
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