PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008245008.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family TALE
Protein Properties Length: 354aa    MW: 39674.4 Da    PI: 5.4423
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008245008.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox277.4e-092973312155
                     HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
        Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                     k +yp+++++  LA+ +gL+++q+ +WF N+R ++
  XP_008245008.1 297 KWPYPTESDKISLAQVTGLDQKQINNWFINQRKRH 331
                     569*****************************885 PP
2ELK37.26.5e-13251272122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELK+ LlrKYsgy+++Lk+EFs
  XP_008245008.1 251 ELKDKLLRKYSGYISTLKHEFS 272
                     9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012558.7E-23113157IPR005540KNOX1
PfamPF037907.6E-22115156IPR005540KNOX1
SMARTSM012564.3E-22168219IPR005541KNOX2
PfamPF037911.5E-22173217IPR005541KNOX2
PfamPF037899.0E-11251272IPR005539ELK domain
PROSITE profilePS5121310.772251271IPR005539ELK domain
SMARTSM011888.9E-8251272IPR005539ELK domain
PROSITE profilePS5007112.503271334IPR001356Homeobox domain
SuperFamilySSF466892.01E-18272346IPR009057Homeodomain-like
SMARTSM003891.3E-12273338IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.6E-27276335IPR009057Homeodomain-like
CDDcd000869.49E-13280335No hitNo description
PfamPF059206.3E-16291330IPR008422Homeobox KN domain
PROSITE patternPS000270309332IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MMEELYGLAS STPASGFSSD QYYSSSMAMP ENLTVPDHHQ HQVEVDCYNY YHKSTFEPLA  60
AALGDRMPGL QRPDPLFSGC SSGVSDAASA VAAGINNQRE RGGGCGLGEE VSCEMNAKIA  120
SHPLYPKLLQ AYIDCQKVGA PPEVASVLDE IRRESDHLIC RRSSTSASTC MATADPELDA  180
FMETYCDILV KYKSDLTRPF DEAITFLNKM ETQLITLSSN NTTTTNDGGG SSDEEDLSGG  240
ETSPRTGEEH ELKDKLLRKY SGYISTLKHE FSKKKKKGKL PREARQTLFD WWNLHDKWPY  300
PTESDKISLA QVTGLDQKQI NNWFINQRKR HWKPSENMQF AVMDTIYRPC FTKD
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008245008.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ0381310.0JQ038131.1 Prunus persica cultivar Chiripa KNOPE2.1 (KNOPE2.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008245008.10.0PREDICTED: homeobox protein knotted-1-like 2
SwissprotQ84JS61e-101KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLA0A251P9Q20.0A0A251P9Q2_PRUPE; Uncharacterized protein
STRINGXP_008245008.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62034125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.19e-91KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]