PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008244842.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | bHLH | ||||||||
Protein Properties | Length: 246aa MW: 28169.8 Da PI: 6.5288 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 47 | 4.5e-15 | 74 | 125 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ +hn+ Er RR++iNs ++ Lr+llP + + kKls + ++v+YI +Lq XP_008244842.1 74 KKLNHNASERDRRQKINSLYSSLRSLLPAD---QMKKLSIPNTISRVVKYIPELQ 125 6789**************************...9******************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.15E-14 | 69 | 138 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.081 | 73 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.6E-12 | 74 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.24E-4 | 74 | 129 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 7.6E-12 | 74 | 142 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.3E-9 | 79 | 130 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MLALSPPSFS TIGWPLEDPK SHDQNYFYRD SFTDQIAESF LHILPSQLPQ VEPARSTPST 60 TLSGEYAGDS TMVKKLNHNA SERDRRQKIN SLYSSLRSLL PADQMKKLSI PNTISRVVKY 120 IPELQKQVEG LIRKREELLV RISKQEDQEL HEEKKMKSTA GSSLSAVSTY RLNDREVAIQ 180 ISTFKTHNNL LSEILLNLEE EGLQILNASS FESSGERVFY NLHLQVERSY RLESENLSEK 240 LMSFYA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 132 | 156 | RKREELLVRISKQEDQELHEEKKMK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008244842.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008244842.1 | 1e-180 | PREDICTED: transcription factor ORG2-like | ||||
TrEMBL | A0A251N6E5 | 1e-170 | A0A251N6E5_PRUPE; Uncharacterized protein | ||||
STRING | XP_008244842.1 | 1e-179 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2402 | 33 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56970.1 | 5e-59 | bHLH family protein |