PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008244773.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 443aa MW: 49156.6 Da PI: 7.2469

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008244773.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.2	6.1e-08	347	387	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+RR+ri +++ L++l+P K++ a++L +A +Y+k L XP_008244773.1 347 ARQRRERISERIRVLQRLVPGG-----SKMDTASMLDEAANYLKFL 387 69****************95.....5**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.237	338	387	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.07E-14	344	401	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.6E-13	344	393	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.1E-12	346	400	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.4E-5	347	387	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.39E-4	360	392	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 443 aa Download sequence Send to blast
MDGSDWDGSY ITNTSTLLWN NHQVHDLEER LLVSRSGPSA FIPIREFQKV QTSHAIMNST 60 TERASNSAQI VHQQNPYLLD SVHAMPTLRA DQFCQAPLMI NKPNYNLMGS PSTTGIFMAA 120 DHYGDTGKHV QTQVIHGLQD HGRAKPATTR SVESLDCLLS GTNSNTDTSV EDDDGISMLF 180 SDCRRNLWNF GAGNNSAISS GESENNETVV SQSSSDLYVQ SQGKKHSTKR SHDQSELHGA 240 NHSHFGLLQT DSSTTEGGFR LISENPPNPK KPRSDKRPSS SNINFQQPSS SVSASSIEEP 300 DPEVIAQMKE MIYRAAAFRP VNLGMDMVER PKRKNVKISS DPQTVAARQR RERISERIRV 360 LQRLVPGGSK MDTASMLDEA ANYLKFLRSQ VKALENLGQK IESMSNSNIP PTSFAFSFNP 420 SFPMQTHHHV PLHNSNHIHQ PHS

Sequence ? help Back to Top

Protein Sequence Length: 443 aa Download sequence Send to blast

MDGSDWDGSY ITNTSTLLWN NHQVHDLEER LLVSRSGPSA FIPIREFQKV QTSHAIMNST  60
TERASNSAQI VHQQNPYLLD SVHAMPTLRA DQFCQAPLMI NKPNYNLMGS PSTTGIFMAA  120
DHYGDTGKHV QTQVIHGLQD HGRAKPATTR SVESLDCLLS GTNSNTDTSV EDDDGISMLF  180
SDCRRNLWNF GAGNNSAISS GESENNETVV SQSSSDLYVQ SQGKKHSTKR SHDQSELHGA  240
NHSHFGLLQT DSSTTEGGFR LISENPPNPK KPRSDKRPSS SNINFQQPSS SVSASSIEEP  300
DPEVIAQMKE MIYRAAAFRP VNLGMDMVER PKRKNVKISS DPQTVAARQR RERISERIRV  360
LQRLVPGGSK MDTASMLDEA ANYLKFLRSQ VKALENLGQK IESMSNSNIP PTSFAFSFNP  420
SFPMQTHHHV PLHNSNHIHQ PHS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	347	352	RQRRER

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008244773.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008244773.1	0.0	PREDICTED: transcription factor bHLH87
Swissprot	Q8S3D2	4e-87	BH087_ARATH; Transcription factor bHLH87
TrEMBL	A0A314XK40	0.0	A0A314XK40_PRUYE; Transcription factor bHLH87
STRING	XP_008244773.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4530	32	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	2e-70	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]