PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008244460.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

Trihelix

Protein Properties

Length: 345aa MW: 38694 Da PI: 10.0166

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008244460.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	58.6	1.6e-18	16	104	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 +Wt++e +aLi ++++++++l+r++l++ +We v++++ ++++qC++k+e+l+kry+++k++ + + + st+ +f+ + XP_008244460.1 16 CWTNDEAQALISIYKDTWSALGRSNLRASDWETVAAALasrcPLVSPPKTAIQCRHKMEKLRKRYRNEKQRGSTHPGRFLSTWDLFRPM 104 8**********************************95332233448899*********************999999999999877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.8E-18	15	104	No hit	No description
PROSITE profile	PS50090	6.388	17	77	IPR017877	Myb-like domain
SMART	SM00595	1.2E-5	24	112	IPR006578	MADF domain

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MAAPPQPKPR KFPPPCWTND EAQALISIYK DTWSALGRSN LRASDWETVA AALASRCPLV 60 SPPKTAIQCR HKMEKLRKRY RNEKQRGSTH PGRFLSTWDL FRPMFDLECE APALFGSDPD 120 RETRVGVQFG RGFRVRKDEN DRYLAESDQN LSDPDEETRK GSGVGGGFRV NAGVRGKGRE 180 NSSFSAGFDR YVSRGNDGAR GFPVKSSGDR NLGPSEFRSK SYGKTCNEKF SPKLNYKRDC 240 GYGAGTISGF YKKFRGGLDS DGVGKEVEDP IGQMASSVEF LGEVFLKMEK KKMEMARDIV 300 KMRMEMEMRQ NELIMESQKQ VLAACVDALL ESKKKKKMKV VSSDS

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MAAPPQPKPR KFPPPCWTND EAQALISIYK DTWSALGRSN LRASDWETVA AALASRCPLV  60
SPPKTAIQCR HKMEKLRKRY RNEKQRGSTH PGRFLSTWDL FRPMFDLECE APALFGSDPD  120
RETRVGVQFG RGFRVRKDEN DRYLAESDQN LSDPDEETRK GSGVGGGFRV NAGVRGKGRE  180
NSSFSAGFDR YVSRGNDGAR GFPVKSSGDR NLGPSEFRSK SYGKTCNEKF SPKLNYKRDC  240
GYGAGTISGF YKKFRGGLDS DGVGKEVEDP IGQMASSVEF LGEVFLKMEK KKMEMARDIV  300
KMRMEMEMRQ NELIMESQKQ VLAACVDALL ESKKKKKMKV VSSDS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008244460.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008244460.1	0.0	PREDICTED: uncharacterized protein LOC103342607
TrEMBL	A0A314YQJ4	0.0	A0A314YQJ4_PRUYE; Uncharacterized protein
STRING	XP_008244460.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13797	14	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	1e-27	Trihelix family protein