PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008244323.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | MYB_related | ||||||||
Protein Properties | Length: 86aa MW: 10199.7 Da PI: 9.2573 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.2 | 5.8e-16 | 10 | 57 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll ++ + +G g W+ ++ + g++R++k+c++rw++yl XP_008244323.1 10 KGAWTKEEDGLLSKCMENHGEGKWHEVPYKAGLNRCRKSCRLRWLNYL 57 79*********************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 21.622 | 5 | 61 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.8E-22 | 6 | 60 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-11 | 9 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-14 | 10 | 57 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.54E-21 | 11 | 85 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.47E-8 | 12 | 57 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-8 | 61 | 85 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 8.048 | 62 | 86 | IPR017930 | Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 86 aa Download sequence Send to blast |
MEGNNLDVRK GAWTKEEDGL LSKCMENHGE GKWHEVPYKA GLNRCRKSCR LRWLNYLKPN 60 IKRGEFTEDE VDLLIRLHKL LGNRYQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-12 | 5 | 85 | 22 | 101 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008244323.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP772283 | 1e-127 | KP772283.1 Prunus cerasifera MYB10.3 transcription factor (MYB10.3) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008244323.1 | 1e-57 | PREDICTED: transcription factor MYB114-like | ||||
Swissprot | Q9FNV9 | 3e-36 | MY113_ARATH; Transcription factor MYB113 | ||||
TrEMBL | A0A0K1TPF1 | 7e-52 | A0A0K1TPF1_9ROSA; MYB10.3 transcription factor | ||||
TrEMBL | M5WV61 | 7e-52 | M5WV61_PRUPE; Uncharacterized protein | ||||
STRING | XP_008244323.1 | 4e-57 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66370.1 | 1e-38 | myb domain protein 113 |
Publications ? help Back to Top | |||
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