PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008244234.2
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family NAC
Protein Properties Length: 467aa    MW: 52932.8 Da    PI: 4.5371
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008244234.2genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM87.62.3e-27191823128
             NAM   3 pGfrFhPtdeelvveyLkkkvegkklelee...............................vikevdiykvePwdLp.k.....kvkaeekewyf 60 
                     p frF+P+de +v + L kk++gk+ ++                                 +i+e+d yk+ePwdL  +         + + w+ 
  XP_008244234.2  19 PEFRFRPSDEKMV-NLLWKKINGKDYQVMPeinykpwdlpdnesiplflrflkqlmqgkasIIPEIDFYKHEPWDLAgAglmfpDSPYQARTWFC 112
                     679**********.99*********666435678899999999****************988**************843676663334788**** PP

             NAM  61 FskrdkkyatgkrknratksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     Fs+ d ky ++ r+nr t++g+Wk tg+ +ev+s+  +++l+  kktL+f+ gr +k++ktdWv +ey l
  XP_008244234.2 113 FSRPDYKYVHSPRRNRLTEKGFWKITGQPREVKSRqlSKSLTCKKKTLTFHLGRPKKSSKTDWVKQEYYL 182
                     **********************************97777779999***********************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100529.42717205IPR003441NAC domain
PfamPF023652.3E-1219181IPR003441NAC domain
SuperFamilySSF1019417.32E-2863205IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MSSGSSTTTT EAWVLDLLPE FRFRPSDEKM VNLLWKKING KDYQVMPEIN YKPWDLPDNE  60
SIPLFLRFLK QLMQGKASII PEIDFYKHEP WDLAGAGLMF PDSPYQARTW FCFSRPDYKY  120
VHSPRRNRLT EKGFWKITGQ PREVKSRQLS KSLTCKKKTL TFHLGRPKKS SKTDWVKQEY  180
YLTPTDPGSN PNQMSGLVLY RVKYRSADYE SYNNCVLGTG NLNDGEPGGF VSSDFDDMIQ  240
EPCDQQEHLD SPSPPPEPPR PHQLPQLGNV HGSTGDYIAS NSDNQAAAIH HMITDEEELL  300
AYKELERVLL GSGNPDDGEL RTCVSSDMLR ELCAQLGEDL DSPFPPPGPP ELGNAPDVCT  360
DECSSWPTPI EDNDSSLPNK NNIPTNYYGK PVSNTASDFE NQTKDERIPE VYSQSEENLQ  420
SFFRSLEEED YTLPSPILYV EQGDVLHANN YIGCNESQYA ALFPHSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-151520215162NO APICAL MERISTEM PROTEIN
1ut4_B3e-151520215162NO APICAL MERISTEM PROTEIN
1ut7_A3e-151520215162NO APICAL MERISTEM PROTEIN
1ut7_B3e-151520215162NO APICAL MERISTEM PROTEIN
3swm_A4e-151520218165NAC domain-containing protein 19
3swm_B4e-151520218165NAC domain-containing protein 19
3swm_C4e-151520218165NAC domain-containing protein 19
3swm_D4e-151520218165NAC domain-containing protein 19
3swp_A4e-151520218165NAC domain-containing protein 19
3swp_B4e-151520218165NAC domain-containing protein 19
3swp_C4e-151520218165NAC domain-containing protein 19
3swp_D4e-151520218165NAC domain-containing protein 19
4dul_A3e-151520215162NAC domain-containing protein 19
4dul_B3e-151520215162NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008244234.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008244234.20.0PREDICTED: NAC domain-containing protein 19-like
TrEMBLA0A251QIY50.0A0A251QIY5_PRUPE; Uncharacterized protein
STRINGXP_008244234.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1714827
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.11e-21NAC domain containing protein 28